Evidence map›Paper›PMID 28071692›Full record

ArticleScientific reports2017

Diversity, distribution, and significance of transposable elements in the genome of the only selfing hermaphroditic vertebrate Kryptolebias marmoratus.

Jae-Sung Rhee, Beom-Soon Choi, Jaebum Kim, Bo-Mi Kim, Young-Mi Lee, Il-Chan Kim, Akira Kanamori, Ik-Young Choi, Manfred Schartl, Jae-Seong Lee

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  6. Article
  7. Review
  8. Article
  9. Transposable Elements and Stress in Vertebrates: An Overview.International journal of molecular sciences · 2021
    Review
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 9 institutions in 4 countries.

Jae-Sung RheeDepartment of Marine Science, College of Natural Sciences, Incheon National University, Incheon 22012, South Korea.
Beom-Soon ChoiPhyzen Genomics Institute, Seoul 08787, South Korea.
Jaebum KimDepartment of Stem Cell and Regenerative Biology, College of Animal Bioscience &Technology, Konkuk University, Seoul 05029, South Korea.
Bo-Mi KimDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
Young-Mi LeeDepartment of Life Science, College of Natural Sciences, Sangmyung University, Seoul 03016, South Korea.
Il-Chan KimDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 21990, South Korea.
Akira KanamoriDivision of Biological Science, Graduate School of Science, Nagoya University, Furocho Chikusa, Nagoya 464-8602, Japan.
Ik-Young ChoiDepartment of Agriculture and Life Industry, Kangwon National University, Chuncheon 24341, South Korea.
Manfred SchartlPhysiological Chemistry, University of Würzburg, Biozentrum, Am Hubland, and Comprehensive Cancer Center, University Clinic Würzburg, Josef Schneider Straße 6, 98074 Würzburg, Germany, and Institute for Advanced Studies and Department of Biology, Texas A&M University, College Station, Texas 77843, USA.
Jae-Seong LeeDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
Sungkyunkwan University · KREarthTech International (United States) · USIncheon National University · KRKangwon National University · KRKonkuk University · KRKorea Polar Research Institute · KRNagoya University · JPPhyzen (South Korea) · KRSangmyung University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Kryptolebias marmoratus is unique because it is the only self-fertilizing hermaphroditic vertebrate, known to date. It primarily reproduces by internal self-fertilization in a mixed ovary/testis gonad. Here, we report on a high-quality genome assembly for the K. marmoratus South Korea (SK) strain highlighting the diversity and distribution of transposable elements (TEs). We find that K. marmoratus genome maintains number and composition of TEs. This can be an important genomic attribute promoting genome recombination in this selfing fish, while, in addition to a mixed mating strategy, it may also represent a mechanism contributing to the evolutionary adaptation to ecological pressure of the species. Future work should help clarify this point further once genomic information is gathered for other taxa of the family Rivulidae that do not self-fertilize. We provide a valuable genome resource that highlights the potential impact of TEs on the genome evolution of a fish species with an uncommon life cycle.

Indexed as

DNA Transposable ElementsAnimalsCyprinodontiformesEvolution, MolecularGenomeRecombination, GeneticSequence Analysis, DNADNA Transposable Elements

Identifiers

PMID28071692
PMCPMC5223126
OpenAlexW2569037704

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.