Evidence map›Paper›PMID 28070487›Full record

ArticleGenomics data2017

Unraveling the microbial and functional diversity of Coamo thermal spring in Puerto Rico using metagenomic library generation and shotgun sequencing.

Ricky Padilla-Del Valle, Luis R Morales-Vale, Carlos Ríos-Velázquez

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Insights on Microbial Communities Inhabiting Non-Volcanic Hot Springs.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ricky Padilla-Del ValleBiology Department, University of Puerto Rico at Mayaguez, 108 Street Bo. Miradero Km 1.3, Zoo Entrance, Mayagüez 00680, Puerto Rico.
Luis R Morales-ValeBiology Department, University of Puerto Rico at Mayaguez, 108 Street Bo. Miradero Km 1.3, Zoo Entrance, Mayagüez 00680, Puerto Rico.
Carlos Ríos-VelázquezBiology Department, University of Puerto Rico at Mayaguez, 108 Street Bo. Miradero Km 1.3, Zoo Entrance, Mayagüez 00680, Puerto Rico.
University of Puerto Rico-Mayaguez · PR

Funding

Transitional MARC-U-STAR-UPRM toward a Diversity Enhancement restructuringT34GM008419 · NIGMS · UNIVERSITY OF PUERTO RICO MAYAGUEZ · PI ORTIZ-BERMUDEZ, PATRICIA, RIOS-VELAZQUEZ, CARLOS · 1991 to 2021
$8.8M
RISE Enhancing Biomedical Sciences and Biomedical Engineering in Science and TechR25GM088023 · NIGMS · UNIVERSITY OF PUERTO RICO MAYAGUEZ · PI LOPEZ-GARRIGA, JUAN · 2010 to 2013
$5.0M
NIGMS NIH HHS R25 GM088023NIGMS NIH HHS T34 GM008419
6 · The paper itself

Abstract

In Puerto Rico, the microbial diversity of the thermal spring (ThS) in Coamo has never been studied using metagenomics. The focus of our research was to generate a metagenomic library from the ThS of Coamo, Puerto Rico and explore the microbial and functional diversity. The metagenomic library from the ThS waters was generated using direct DNA isolation. High molecular weight (40 kbp) DNA was end-repaired, electro eluted and ligated into a fosmid vector (pCCFOS1); then transduced into

Indexed as

BioprospectCoamoFosmid libraryMetagenomePuerto RicoShotgun sequencingThermal spring

Identifiers

PMID28070487
PMCPMC5219636
OpenAlexW2561212952

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.