Evidence map›Paper›PMID 28069948›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Genomic targeting of epigenetic probes using a chemically tailored Cas9 system.

Glen P Liszczak, Zachary Z Brown, Samuel H Kim, Rob C Oslund, Yael David, Tom W Muir

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Expression and Functional Analysis of the Compact ThermophilicInternational journal of molecular sciences · 2023
    Article
  7. Chemical tools targeting readers of lysine methylation.Current opinion in chemical biology · 2023
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Live-cell protein engineering with an ultra-short split intein.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Epigenetic Control of a Local Chromatin Landscape.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Article
  19. The roles of DNA, RNA and histone methylation in ageing and cancer.Nature reviews. Molecular cell biology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Glen P LiszczakDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Zachary Z BrownDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Samuel H KimDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Rob C OslundDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Yael DavidDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Tom W MuirDepartment of Chemistry, Princeton University, Princeton, NJ 08544 muir@princeton.edu.

Funding

Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI YOUNG, MICHAEL WARREN · 2015 to 2024
$17.6M
Structure, Function and Applications of InteinsR37GM086868 · NIGMS · PRINCETON UNIVERSITY · PI MUIR, TOM · 2012 to 2021
$5.4M
Development and Applications of 'Designer Chromatin'R01GM107047 · NIGMS · PRINCETON UNIVERSITY · PI MUIR, TOM · 2013 to 2016
$1.2M
Mechanisms and Epigenetic Effectors of Cellular Reprogramming Factor ActivityF32GM110880 · NIGMS · PRINCETON UNIVERSITY · PI LISZCZAK, GLEN · 2014 to 2016
$158k
NCI NIH HHS P01 CA196539NIGMS NIH HHS F32 GM110880NIGMS NIH HHS R01 GM107047NIGMS NIH HHS R37 GM086868
6 · The paper itself

Abstract

Recent advances in the field of programmable DNA-binding proteins have led to the development of facile methods for genomic localization of genetically encodable entities. Despite the extensive utility of these tools, locus-specific delivery of synthetic molecules remains limited by a lack of adequate technologies. Here we combine the flexibility of chemical synthesis with the specificity of a programmable DNA-binding protein by using protein trans-splicing to ligate synthetic elements to a nuclease-deficient Cas9 (dCas9) in vitro and subsequently deliver the dCas9 cargo to live cells. The versatility of this technology is demonstrated by delivering dCas9 fusions that include either the small-molecule bromodomain and extra-terminal family bromodomain inhibitor JQ1 or a peptide-based PRC1 chromodomain ligand, which are capable of recruiting endogenous copies of their cognate binding partners to targeted genomic binding sites. We expect that this technology will allow for the genomic localization of a wide array of small molecules and modified proteinaceous materials.

Indexed as

Amino Acid SequenceBinding SitesCRISPR-Associated ProteinsCRISPR-Cas SystemsDNA-Binding ProteinsEpigenomicsEscherichia coliGenomicsRecombinant ProteinsCRISPR-Associated ProteinsDNA-Binding ProteinsRecombinant Proteinschemical biologyepigenome engineeringintein splicingprotein deliveryprotein semisynthesis

Identifiers

PMID28069948
PMCPMC5278450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.