Evidence map›Paper›PMID 28067916›Full record

ArticleNature structural & molecular biology2017

Self-correcting mismatches during high-fidelity DNA replication.

Rafael Fernandez-Leiro, Julian Conrad, Ji-Chun Yang, Stefan M V Freund, Sjors H W Scheres, Meindert H Lamers

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The proofreading mechanism of the human leading-strand DNA polymerase ε holoenzyme.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Structure, function and evolution of the bacterial DinG-like proteins.Computational and structural biotechnology journal · 2025
    Review
  9. An additional proofreader contributes to DNA replication fidelity in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Review
  12. Structural basis for DNA proofreading.Nature communications · 2023
    Article
  13. Article
  14. A four-point molecular handover during Okazaki maturation.Nature structural & molecular biology · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rafael Fernandez-LeiroMRC laboratory of Molecular Biology, Cambridge, UK.
Julian ConradMRC laboratory of Molecular Biology, Cambridge, UK.
Ji-Chun YangMRC laboratory of Molecular Biology, Cambridge, UK.
Stefan M V FreundMRC laboratory of Molecular Biology, Cambridge, UK.
Sjors H W ScheresMRC laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-0462-6540
Meindert H LamersMRC laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-4205-1338

Funding

Medical Research Council MC_U105178934Medical Research Council MC_U105197143Medical Research Council MC_UP_A025_1013
6 · The paper itself

Abstract

Faithful DNA replication is essential to all forms of life and depends on the action of 3'-5' exonucleases that remove misincorporated nucleotides from the newly synthesized strand. However, how the DNA is transferred from the polymerase to the exonuclease active site is not known. Here we present the cryo-EM structure of the editing mode of the catalytic core of the Escherichia coli replisome, revealing a dramatic distortion of the DNA whereby the polymerase thumb domain acts as a wedge that separates the two DNA strands. Importantly, NMR analysis of the DNA substrate shows that the presence of a mismatch increases the fraying of the DNA, thus enabling it to reach the exonuclease active site. Therefore the mismatch corrects itself, whereas the exonuclease subunit plays a passive role. Hence, our work provides unique insights into high-fidelity replication and establishes a new paradigm for the correction of misincorporated nucleotides.

Indexed as

DNA ReplicationBase PairingBase SequenceCatalytic DomainCryoelectron MicroscopyDNA, BacterialDNA Mismatch RepairDNA Polymerase IIIEscherichia coliNucleic Acid ConformationProtein BindingProtein Conformation, alpha-HelicalProtein Structure, QuaternaryProtein SubunitsDNA, BacterialDNA Polymerase IIIDNA polymerase III, alpha subunitProtein Subunits

Identifiers

PMID28067916
PMCPMC5300136

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.