Evidence map›Paper›PMID 28067906›Full record

ArticleNature microbiology2017

Prophage-mediated defence against viral attack and viral counter-defence.

Rebekah M Dedrick, Deborah Jacobs-Sera, Carlos A Guerrero Bustamante, Rebecca A Garlena, Travis N Mavrich, Welkin H Pope, Juan C Cervantes Reyes, Daniel A Russell, Tamarah Adair, Richard Alvey and 34 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
18.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 288 citations in OpenAlex.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
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  15. A Gifsy prophage-encoded protein confers broad phage resistance inApplied and environmental microbiology · 2025
    Article
  16. Article
  17. All the world's a phage.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Article

117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 20 institutions in 2 countries.

Rebekah M DedrickDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Deborah Jacobs-SeraDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Carlos A Guerrero BustamanteDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Rebecca A GarlenaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Travis N MavrichDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Welkin H PopeDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Juan C Cervantes ReyesDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Daniel A RussellDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Tamarah AdairDepartment of Biology, Baylor University, Waco, Texas 76798, USA.
Richard AlveyBiology Department, Illinois-Wesleyan University, Bloomington, Illinois 61702, USA.
J Alfred BonillaBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin 54016, USA.
Jerald S BrickerBiology Department, Nebraska-Wesleyan University, Lincoln, Nebraska 68504, USA.
Bryony R BrownDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Deanna ByrnesBiology Department, Carthage College, Kenosha, Wisconsin 53140, USA.
Steven G CresawnBiology Department, James Madison University, Harrisonburg, Virginia 22807, USA.
William B DavisSchool of Molecular Biosciences, Washington State University Pullman, Washington 99164, USA.
Leon A DicksonDepartment of Biology, Howard University, Washington, Washington DC 20059, USA.
Nicholas P EdgingtonBiology Department, Southern Connecticut State University, New Haven, Connecticut 06515, USA.
Ann M FindleyBiology, School of Sciences, University of Louisiana at Monroe, Monroe, Louisiana 71209, USA.
Urszula GolebiewskaBiological Sciences and Geology, Queensborough Community College, Bayside, New York 11364, USA.
Julianne H GroseBiology Department, Brigham Young University, Provo, Utah 84602, USA.
Cory F HayesDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
Lee E HughesBiological Sciences, University of North Texas, Denton, Texas 76203, USA.
Keith W HutchisonMolecular and Biomedical Sciences, University of Maine, Honors College, Orono, Maine 04469, USA.
Sharon IsernDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, Florida 33965, USA.
Allison A JohnsonBiology Department, Virginia Commonwealth University, Richmond, Virginia 23284, USA.
Margaret A KennaBiological Sciences, Lehigh University, Bethlehem, Pennsylvania 18015, USA.
Karen K KlyczekBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin 54016, USA.
Catherine M MageeneyBiological Sciences, Lehigh University, Bethlehem, Pennsylvania 18015, USA.
Scott F MichaelDepartment of Biological Sciences, Florida Gulf Coast University, Fort Myers, Florida 33965, USA.
Sally D MolloyMolecular and Biomedical Sciences, University of Maine, Honors College, Orono, Maine 04469, USA.
Matthew T MontgomeryDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
James NeitzelBiology Department, The Evergreen State College, Olympia, Washington 98502, USA.
Shallee T PageDivision of Environmental and Biological Sciences, University of Maine-Machias, Machias, Maine 04654, USA.
Marie C PizzornoBiology Department, Bucknell University, Lewisburg, Pennsylvania 17837, USA.
Marianne K PoxleitnerBiology Department, Gonzaga University, Spokane, Washington 99258, USA.
Claire A RinehartBiology Department, Western Kentucky University, Bowling Green, Kentucky 42101, USA.
Courtney J RobinsonDepartment of Biology, Howard University, Washington, Washington DC 20059, USA.
Michael R RubinBiology Department, University of Puerto Rico-Cayey, Cayey, Puerto Rico 00736, USA.
Joseph N TeyimBiological Sciences, Lehigh University, Bethlehem, Pennsylvania 18015, USA.
Edwin VazquezBiology Department, University of Puerto Rico-Cayey, Cayey, Puerto Rico 00736, USA.
Vassie C WareBiological Sciences, Lehigh University, Bethlehem, Pennsylvania 18015, USA.
Jacqueline WashingtonDepartment of Biology and Chemistry, Nyack College, Nyack, New York 10960, USA.
Graham F HatfullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.
University of Pittsburgh · USLehigh University · USFlorida Gulf Coast University · USHoward University · USUniversity of Maine · USUniversity of Puerto Rico at Cayey · PRUniversity of Wisconsin–River Falls · USBaylor University · USBrigham Young University · USBucknell University · USCarthage College · USGonzaga University · USIllinois Wesleyan University · USJames Madison University · USNebraska Wesleyan University · USNyack College · USQueensborough Community College, CUNY · USSouthern Connecticut State University · USThe Evergreen State College · USUniversity of Louisiana at Monroe · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI JAMES A COFFMAN · 2012 to 2026
$60.0M
Dynamics of viral host range evolutionR01GM116884 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HATFULL, GRAHAM F. · 2015 to 2019
$2.0M
NIGMS NIH HHS P20 GM103423NIGMS NIH HHS R01 GM116884
6 · The paper itself

Abstract

Temperate phages are common, and prophages are abundant residents of sequenced bacterial genomes. Mycobacteriophages are viruses that infect mycobacterial hosts including Mycobacterium tuberculosis and Mycobacterium smegmatis, encompass substantial genetic diversity and are commonly temperate. Characterization of ten Cluster N temperate mycobacteriophages revealed at least five distinct prophage-expressed viral defence systems that interfere with the infection of lytic and temperate phages that are either closely related (homotypic defence) or unrelated (heterotypic defence) to the prophage. Target specificity is unpredictable, ranging from a single target phage to one-third of those tested. The defence systems include a single-subunit restriction system, a heterotypic exclusion system and a predicted (p)ppGpp synthetase, which blocks lytic phage growth, promotes bacterial survival and enables efficient lysogeny. The predicted (p)ppGpp synthetase coded by the Phrann prophage defends against phage Tweety infection, but Tweety codes for a tetrapeptide repeat protein, gp54, which acts as a highly effective counter-defence system. Prophage-mediated viral defence offers an efficient mechanism for bacterial success in host-virus dynamics, and counter-defence promotes phage co-evolution.

Indexed as

DNA, ViralGenetic VariationGenome, BacterialGenome, ViralLigasesLysogenyMycobacteriophagesMycobacterium smegmatisMycobacterium tuberculosisPhylogenyProphagesViral ProteinsDNA, Viralguanosine 3',5'-polyphosphate synthetasesLigasesViral Proteins

Identifiers

PMID28067906
PMCPMC5508108
OpenAlexW2570615709

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.