Evidence map›Paper›PMID 28067254›Full record

ArticleScientific reports2017

Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.

Cindy J Castelle, Christopher T Brown, Brian C Thomas, Kenneth H Williams, Jillian F Banfield

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. The dynamic history of prokaryotic phyla: discovery, diversity and division.International journal of systematic and evolutionary microbiology · 2024
    Review
  11. Article
  12. Ubiquitous genome streamlinedISME communications · 2024
    Article
  13. "Applied and environmental microbiology · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Occurrence, Diversity, and Genomes of "Applied and environmental microbiology · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Cindy J CastelleDepartment of Earth and Planetary Sciences, University of California, Berkeley, California, United States.
Christopher T BrownDepartment of Plant and Microbial Biology, University of California, Berkeley, California, United States.
Brian C ThomasDepartment of Earth and Planetary Sciences, University of California, Berkeley, California, United States.
Kenneth H WilliamsEarth and Environmental Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States.
Jillian F BanfieldDepartment of Earth and Planetary Sciences, University of California, Berkeley, California, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Candidate Phyla Radiation (CPR) is a large group of bacteria, the scale of which approaches that of all other bacteria. CPR organisms are inferred to depend on other community members for many basic cellular building blocks and all appear to be obligate anaerobes. To date, there has been no evidence for any significant respiratory capacity in an organism from this radiation. Here we report a curated draft genome for 'Candidatus Parcunitrobacter nitroensis' a member of the Parcubacteria (OD1) superphylum of the CPR. The genome encodes versatile energy pathways, including fermentative and respiratory capacities, nitrogen and fatty acid metabolism, as well as the first complete electron transport chain described for a member of the CPR. The sequences of all of these enzymes are highly divergent from sequences found in other organisms, suggesting that these capacities were not recently acquired from non-CPR organisms. Although the wide respiration-based repertoire points to a different lifestyle compared to other CPR bacteria, we predict similar obligate dependence on other organisms or the microbial community. The results substantially expand the known metabolic potential of CPR bacteria, although sequence comparisons indicate that these capacities are very rare in members of this radiation.

Indexed as

RespirationBacteriaEnergy MetabolismFermentationGenome, BacterialMetagenomicsNitrogenPhylogenyNitrogen

Identifiers

PMID28067254
PMCPMC5220378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.