Evidence map›Paper›PMID 28066806›Full record

ArticleTomography (Ann Arbor, Mich.)2016

Automated Segmentation of Hyperintense Regions in FLAIR MRI Using Deep Learning.

Panagiotis Korfiatis, Timothy L Kline, Bradley J Erickson

Abstract read
In one paragraph

Article in Tomography (Ann Arbor, Mich.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Deep Learning Based Noise Reduction for Brain MR Imaging: Tests on Phantoms and Healthy Volunteers.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2020
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Deep Learning in Neuroradiology.AJNR. American journal of neuroradiology · 2018
    Review
  17. Deep Learning in Radiology: Does One Size Fit All?Journal of the American College of Radiology : JACR · 2018
    Article
  18. Imaging in neuro-oncology.Therapeutic advances in neurological disorders · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Panagiotis KorfiatisDepartment of Radiology, Mayo Clinic, Rochester, Minnesota.
Timothy L KlineDepartment of Radiology, Mayo Clinic, Rochester, Minnesota.
Bradley J EricksonDepartment of Radiology, Mayo Clinic, Rochester, Minnesota.

Funding

Pilot and FeasibilityP30DK090728 · NIDDK · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2010 to 2019
$11.8M
Objective decision support environment for clinical trialsU01CA160045 · NCI · MAYO CLINIC ROCHESTER · PI ERICKSON, BRADLEY J. · 2012 to 2016
$2.6M
NCI NIH HHS U01 CA160045NIDDK NIH HHS P30 DK090728
6 · The paper itself

Abstract

We present a deep convolutional neural network application based on autoencoders aimed at segmentation of increased signal regions in fluid-attenuated inversion recovery magnetic resonance imaging images. The convolutional autoencoders were trained on the publicly available Brain Tumor Image Segmentation Benchmark (BRATS) data set, and the accuracy was evaluated on a data set where 3 expert segmentations were available. The simultaneous truth and performance level estimation (STAPLE) algorithm was used to provide the ground truth for comparison, and Dice coefficient, Jaccard coefficient, true positive fraction, and false negative fraction were calculated. The proposed technique was within the interobserver variability with respect to Dice, Jaccard, and true positive fraction. The developed method can be used to produce automatic segmentations of tumor regions corresponding to signal-increased fluid-attenuated inversion recovery regions.

Indexed as

autoencodersconvolutionFLAIRsegmentation

Identifiers

PMID28066806
PMCPMC5215737

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.