Evidence map›Paper›PMID 28065760›Full record

ArticleBiochimica et biophysica acta. General subjects2017

Establishment of a suite of assays that support the discovery of proteasome stimulators.

Darci J Trader, Scott Simanski, Paige Dickson, Thomas Kodadek

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. General subjects, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Proteasome: Role in T Cell Function Regulation.International journal of biological sciences · 2025
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Discovery and Development of Cyclic Peptide Proteasome Stimulators.Chembiochem : a European journal of chemical biology · 2024
    Article
  12. Review
  13. Article
  14. Proteasome localization and activity in pig brain andFrontiers in cellular neuroscience · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Darci J TraderDepartments of Chemistry and Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Scott SimanskiDepartments of Chemistry and Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Paige DicksonDepartments of Chemistry and Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Thomas KodadekDepartments of Chemistry and Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States. Electronic address: kodadek@scripps.edu.
Scripps Research Institute · US

Funding

Discovery of Constrained Peptoid Oligomers for Novel Therapy of Multiple MyelomaF32CA186612 · NCI · SCRIPPS FLORIDA · PI TRADER, DARCI J · 2014 to 2015
$102k
NCI NIH HHS F32 CA186612
6 · The paper itself

Abstract

backgroundThe proteasome catalyzes the degradation of many mis-folded proteins, which are otherwise cytotoxic. There is interest in the discovery of proteasome agonists, but previous efforts to do so have been disappointing.

methodsThe cleavage of small fluorogenic peptides is used routinely as an assay to screen for proteasome modulators. We have developed follow-on assays that employ more physiologically relevant substrates.

resultsTo demonstrate the efficacy of this workflow, the NIH Clinical Collection (NCC) was screened. While many compounds stimulated proteasome-mediated proteolysis of the pro-fluorogenic peptide substrates, most failed to evince activity in assays with larger peptide or protein substrates. We also show that two molecules claimed previously to be proteasome agonists, oleuropein and betulinic acid, indeed accelerate hydrolysis of the fluorogenic substrate, but have no effect on the turnover of a mis-folded protein in vitro or in cellulo. However, two small molecules from the NCC, MK-866 and AM-404, stimulate the proteasome-mediated turnover of a mis-folded protein in living cells by 3- to 4-fold.

conclusionAssays that monitor the proteasome-mediated degradation of larger peptides and proteins can distinguish bona fide agonists from compounds only able to stimulate the cleavage of short, non-physiologically relevant peptides. GENERAL SIGNIFICANCE: A suite of assays has been established that allows the discovery of bona fide proteasome agonists. AM-404 and MK-866 can be useful tools for cell culture experiments, and can serve as scaffolds to generate more potent 20S stimulators.

Indexed as

Arachidonic AcidsBetulinic AcidBiological AssayHumansHydrolysisIridoid GlucosidesIridoidsPentacyclic TriterpenesPeptidesProteasome Endopeptidase ComplexProteasome InhibitorsProteinsProteolysisSmall Molecule LibrariesTriterpenesArachidonic AcidsBetulinic AcidIridoid GlucosidesIridoidsN-(4-hydroxyphenyl)arachidonylamideoleuropeinPentacyclic TriterpenesPeptidesProteasome Endopeptidase ComplexProteasome InhibitorsProteinsSmall Molecule LibrariesTriterpenesAgonistHigh-throughput screeningMass spectrometryParkinson's diseaseProteasomeα-Synuclein

Identifiers

PMID28065760
PMCPMC5366797
OpenAlexW2569587996

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.