Evidence map›Paper›PMID 28065387›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]

Phenol degradation and genotypic analysis of dioxygenase genes in bacteria isolated from sediments.

Mengyang Tian, Dongyun Du, Wei Zhou, Xiaobo Zeng, Guojun Cheng

Open access · hybridAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Bisphenols-A Threat to the Natural Environment.Materials (Basel, Switzerland) · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Materials (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Biodegradation of phenol by Acinetobacter tandoii isolated from the gut of the termite.Environmental science and pollution research international · 2019
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mengyang TianSouth-Central University for Nationalities, College of Life Science, Wuhan, PR China.
Dongyun DuSouth-Central University for Nationalities, College of Chemistry and Materials, Wuhan, PR China.
Wei ZhouSouth-Central University for Nationalities, College of Life Science, Wuhan, PR China.
Xiaobo ZengSouth-Central University for Nationalities, College of Life Science, Wuhan, PR China.
Guojun ChengSouth-Central University for Nationalities, College of Life Science, Wuhan, PR China. Electronic address: chengguojun@mail.scuec.edu.cn.
South Central University for Nationalities · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aerobic degradation of aromatic compounds by bacteria is performed by dioxygenases. To show some characteristic patterns of the dioxygenase genotype and its degradation specificities, twenty-nine gram-negative bacterial cultures were obtained from sediment contaminated with phenolic compounds in Wuhan, China. The isolates were phylogenetically diverse and belonged to 10 genera. All 29 gram-negative bacteria were able to utilize phenol, m-dihydroxybenzene and 2-hydroxybenzoic acid as the sole carbon sources, and members of the three primary genera Pseudomonas, Acinetobacter and Alcaligenes were able to grow in the presence of multiple monoaromatic compounds. PCR and DNA sequence analysis were used to detect dioxygenase genes coding for catechol 1,2-dioxygenase, catechol 2,3-dioxygenase and protocatechuate 3,4-dioxygenase. The results showed that there are 4 genotypes; most strains are either PNP (catechol 1,2-dioxygenase gene is positive, catechol 2,3-dioxygenase gene is negative, protocatechuate 3,4-dioxygenase gene is positive) or PNN (catechol 1,2-dioxygenase gene is positive, catechol 2,3-dioxygenase gene is negative, protocatechuate 3,4-dioxygenase gene is negative). The strains with two dioxygenase genes can usually grow on many more aromatic compounds than strains with one dioxygenase gene. Degradation experiments using a mixed culture representing four bacterial genotypes resulted in the rapid degradation of phenol. Determinations of substrate utilization and phenol degradation revealed their affiliations through dioxygenase genotype data.

Indexed as

AcinetobacterAlcaligenesBiotransformationCarbonChinaCluster AnalysisDioxygenasesDNA, BacterialDNA, RibosomalEnvironmental PollutionGeologic SedimentsGram-Negative BacteriaPhenolPhylogenyPolymerase Chain ReactionPseudomonasCarbonDioxygenasesDNA, BacterialDNA, RibosomalPhenolRNA, Ribosomal, 16SSoil PollutantsDioxygenase genesGram-negative bacteriaIsolation and identificationPhenol biodegradationSubstrate utilization

Identifiers

PMID28065387
PMCPMC5470458
OpenAlexW2562109232

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.