Evidence map›Paper›PMID 28062855›Full record

ArticleNucleic acids research2017

Expression of the eRF1 translation termination factor is controlled by an autoregulatory circuit involving readthrough and nonsense-mediated decay in plants.

Tünde Nyikó, Andor Auber, Levente Szabadkai, Anna Benkovics, Mariann Auth, Zsuzsanna Mérai, Zoltán Kerényi, Andrea Dinnyés, Ferenc Nagy, Dániel Silhavy

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Tünde NyikóDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Andor AuberDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Levente SzabadkaiDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Anna BenkovicsDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Mariann AuthDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Zsuzsanna MéraiDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Zoltán KerényiDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Andrea DinnyésDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Ferenc NagyInstitute of Plant Biology, Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Temesvári 62, H-6726, Hungary.
Dániel SilhavyDepartment of Genetics, Agricultural Biotechnology Institute, Gödöllo, Szent-Györgyi 4, H-2100, Hungary.
Agricultural Biotechnology Institute · HUHUN-REN Szegedi Biológiai Kutatóközpont · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When a ribosome reaches a stop codon, the eukaryotic Release Factor 1 (eRF1) binds to the A site of the ribosome and terminates translation. In yeasts and plants, both over- and underexpression of eRF1 lead to altered phenotype indicating that eRF1 expression should be strictly controlled. However, regulation of eRF1 level is still poorly understood. Here we show that expression of plant eRF1 is controlled by a complex negative autoregulatory circuit, which is based on the unique features of the 3΄untranslated region (3΄UTR) of the eRF1-1 transcript. The stop codon of the eRF1-1 mRNA is in a translational readthrough promoting context, while its 3΄UTR induces nonsense-mediated decay (NMD), a translation termination coupled mRNA degradation mechanism. We demonstrate that readthrough partially protects the eRF1-1 mRNA from its 3΄UTR induced NMD, and that elevated eRF1 levels inhibit readthrough and stimulate NMD. Thus, high eRF1 level leads to reduced eRF1-1 expression, as weakened readthrough fails to protect the eRF1-1 mRNA from the more intense NMD. This eRF1 autoregulatory circuit might serve to finely balance general translation termination efficiency.

Indexed as

Gene Expression Regulation, PlantNonsense Mediated mRNA DecayProtein Biosynthesis3' Untranslated RegionsArabidopsisArabidopsis ProteinsHomeostasisIntronsModels, GeneticNicotianaPeptide Chain Elongation, TranslationalPeptide Chain Termination, TranslationalPeptide Termination FactorsPlants, Genetically ModifiedRNA, Messenger3' Untranslated RegionsArabidopsis Proteinseukaryotic release factor 1, ArabidopsisPeptide Termination FactorsRNA, Messenger

Identifiers

PMID28062855
PMCPMC5397192
OpenAlexW2568140847

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.