Evidence map›Paper›PMID 28061813›Full record

ArticleBMC genomics2017

Construction of a high-density genetic map using specific-locus amplified fragments in sorghum.

Guisu Ji, Qingjiang Zhang, Ruiheng Du, Peng Lv, Xue Ma, Shu Fan, Suying Li, Shenglin Hou, Yucui Han, Guoqing Liu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Guisu JiInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Qingjiang ZhangInstitute of Cereal and Oil Crops, Hebei Academy of Agricultural & Forestry Sciences, Shijiazhuang, 050035, China.
Ruiheng DuInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Peng LvInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Xue MaInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Shu FanBiomarker Technologies Corporation, Beijing, 101300, China.
Suying LiInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Shenglin HouInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Yucui HanInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China.
Guoqing LiuInstitute of Millet Crops, Hebei Academy of Agricultural & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang, 050035, China. guoqingliu@hotmail.com.
Hebei Academy of Agriculture and Forestry Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSorghum is mainly used as a human food and beverage source, playing an important role in the production of ethanol and other bio-industrial products. Thus it is regarded as a model crop for energy plants. Genetic map construction is the foundation for marker-assisted selection and gene cloning. So far several sorghum linkage maps have been reported using different kinds of molecular markers. However marker numbers and chromosome coverage are limited. As a result, it is difficult to get consistent results and the maps are hard to unify. In the present study, the genomes of 130 individuals consisting an F

resultsA high-throughput sequencing method was adopted to screen SLAF markers with 130 F

conclusionA high density sorghum genetic map was constructed in this study. The total length was 2158.1 cM covering all 10 chromosomes with a total number of 2246 SLAF markers. The construction of this map can provide detailed information for accurate gene localization and cloning and application of marker-assisted breeding.

Indexed as

Nucleic Acid Amplification TechniquesChromosome MappingHigh-Throughput Nucleotide SequencingPolymorphism, Single NucleotideQuantitative Trait LociSorghumHigh-throughput sequencingLinkage map constructionSLAF markerSorghum bicolor

Identifiers

PMID28061813
PMCPMC5219666
OpenAlexW2570348669

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.