Evidence map›Paper›PMID 28060489›Full record

ReviewChemical reviews2017

Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Ayanjeet Ghosh, Joshua S Ostrander, Martin T Zanni

Abstract readReview
In one paragraph

Review in Chemical reviews, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Review
  3. A machine learning protocol for predicting structural distributions of amyloid-forming proteins from 2D IR spectra.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. AI protocol for retrieving protein dynamic structures from two-dimensional infrared spectra.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Do selectivity filter carbonyls in KJournal of structural biology: X · 2024
    Article
  12. Article
  13. Scattering Elimination in 2D IR Immune from Detector Artifacts.The journal of physical chemistry. B · 2024
    Article
  14. Article
  15. Unraveling dynamic protein structures by two-dimensional infrared spectra with a pretrained machine learning model.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Water inside the Selectivity Filter of a KJournal of the American Chemical Society · 2024
    Article
  19. Review
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ayanjeet GhoshDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Joshua S OstranderDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.ORCID http://orcid.org/0000-0002-6338-6639
Martin T ZanniDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.ORCID http://orcid.org/0000-0001-7191-9768

Funding

Structural mechanism of diabetic amyloid formationR01DK079895 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Martin T Zanni · 2008 to 2026
$7.7M
Crystallin aggregation and stabilizationR01GM102387 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ZANNI, MARTIN T · 2014 to 2017
$1.1M
NIDDK NIH HHS R01 DK079895NIGMS NIH HHS R01 GM102387
6 · The paper itself

Abstract

Proteins exhibit structural fluctuations over decades of time scales. From the picosecond side chain motions to aggregates that form over the course of minutes, characterizing protein structure over these vast lengths of time is important to understanding their function. In the past 15 years, two-dimensional infrared spectroscopy (2D IR) has been established as a versatile tool that can uniquely probe proteins structures on many time scales. In this review, we present some of the basic principles behind 2D IR and show how they have, and can, impact the field of protein biophysics. We highlight experiments in which 2D IR spectroscopy has provided structural and dynamical data that would be difficult to obtain with more standard structural biology techniques. We also highlight technological developments in 2D IR that continue to expand the scope of scientific problems that can be accessed in the biomedical sciences.

Indexed as

HumansModels, MolecularProtein ConformationProteinsSpectrophotometry, InfraredProteins

Identifiers

PMID28060489
PMCPMC5500453

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.