ArticleBioinformatics (Oxford, England)2017
PanViz: interactive visualization of the structure of functionally annotated pangenomes.
Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed.
- From structural pangenomes to functional panomics in plants.Molecular biology and evolution · 2026Review
- Attenuation ofJournal of microbiology and biotechnology · 2026Article
- Pan-genomics: Insight into the Functional Genome, Applications, Advancements, and Challenges.Current genomics · 2025Review
- Visualizing metagenomic and metatranscriptomic data: A comprehensive review.Computational and structural biotechnology journal · 2024Review
- Seven quick tips for gene-focused computational pangenomic analysis.BioData mining · 2024Article
- Next Generation Sequencing Approaches to Characterize the Respiratory Tract Virome.Microorganisms · 2022Review
- Review
- An object-oriented framework for evolutionary pangenome analysis.Cell reports methods · 2021Article
- Article
- Next-Generation Breeding Strategies for Climate-Ready Crops.Frontiers in plant science · 2021Review
- MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.GigaScience · 2018Article
- PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.BMC bioinformatics · 2018Article
- Metaviz: interactive statistical and visual analysis of metagenomic data.Nucleic acids research · 2018Article
- Hierarchical sets: analyzing pangenome structure through scalable set visualizations.Bioinformatics (Oxford, England) · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Summary: PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses. Availability and Implementation: PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz . A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator . Contact: thomasp85@gmail.com. Supplementary information: Supplementary data are available at Bioinformatics online.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.