Evidence map›Paper›PMID 28056780›Full record

ArticleBMC bioinformatics2017

KinMap: a web-based tool for interactive navigation through human kinome data.

Sameh Eid, Samo Turk, Andrea Volkamer, Friedrich Rippmann, Simone Fulle

Abstract read
In one paragraph

Article in BMC bioinformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 193 papers.

0numbers the graph read from it
0cells of the map it votes in
193citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

193 citing papers in PubMed.

  1. Trial
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  4. An Integrated Proteomics and Genomics Approach to Identify Essential Protein Kinases During Human Trophoblast Development.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  12. GαMetabolites · 2026
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  18. Discovery of Covalent Ligands with AlphaFold3.Journal of the American Chemical Society · 2026
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  20. Article

133 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sameh EidBioMed X Innovation Center, Im Neuenheimer Feld 515, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-4689-6354
Samo TurkBioMed X Innovation Center, Im Neuenheimer Feld 515, 69120, Heidelberg, Germany.
Andrea VolkamerBioMed X Innovation Center, Im Neuenheimer Feld 515, 69120, Heidelberg, Germany.
Friedrich RippmannComputational Chemistry and Biology, Merck KGaA, Frankfurter Str. 250, 64293, Darmstadt, Germany.
Simone FulleBioMed X Innovation Center, Im Neuenheimer Feld 515, 69120, Heidelberg, Germany. fulle@bio.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnnotations of the phylogenetic tree of the human kinome is an intuitive way to visualize compound profiling data, structural features of kinases or functional relationships within this important class of proteins. The increasing volume and complexity of kinase-related data underlines the need for a tool that enables complex queries pertaining to kinase disease involvement and potential therapeutic uses of kinase inhibitors.

resultsHere, we present KinMap, a user-friendly online tool that facilitates the interactive navigation through kinase knowledge by linking biochemical, structural, and disease association data to the human kinome tree. To this end, preprocessed data from freely-available sources, such as ChEMBL, the Protein Data Bank, and the Center for Therapeutic Target Validation platform are integrated into KinMap and can easily be complemented by proprietary data. The value of KinMap will be exemplarily demonstrated for uncovering new therapeutic indications of known kinase inhibitors and for prioritizing kinases for drug development efforts.

conclusionKinMap represents a new generation of kinome tree viewers which facilitates interactive exploration of the human kinome. KinMap enables generation of high-quality annotated images of the human kinome tree as well as exchange of kinome-related data in scientific communications. Furthermore, KinMap supports multiple input and output formats and recognizes alternative kinase names and links them to a unified naming scheme, which makes it a useful tool across different disciplines and applications. A web-service of KinMap is freely available at http://www.kinhub.org/kinmap/ .

Indexed as

Databases, ProteinInternetSoftwareCarcinoma, Non-Small-Cell LungDrug DesignHumansModels, MolecularMolecular BiologyMolecular Sequence AnnotationPhylogenyProtein Kinase InhibitorsProtein KinasesProtein Kinase InhibitorsProtein KinasesHuman kinome treeImagesInteractive annotationProtein kinases

Identifiers

PMID28056780
PMCPMC5217312

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Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.