Evidence map›Paper›PMID 28056499›Full record

ArticleProteins2017

Recognition of HIV-inactivating peptide triazoles by the recombinant soluble Env trimer, BG505 SOSIP.664.

Kriti Acharya, Adel A Rashad, Francesca Moraca, Per Johan Klasse, John P Moore, Cameron Abrams, Irwin Chaiken

Abstract read
In one paragraph

Article in Proteins, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kriti AcharyaDepartment of Biochemistry and Molecular Biology, Drexel University, Philadelphia, Pennsylvania, 19102.ORCID 0000-0002-3408-149X
Adel A RashadDepartment of Biochemistry and Molecular Biology, Drexel University, Philadelphia, Pennsylvania, 19102.
Francesca MoracaDepartment of Chemical and Biological Engineering, Drexel University, Philadelphia, Pennsylvania, 19104.
Per Johan KlasseDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, New York, 10065.
John P MooreDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, New York, 10065.
Cameron AbramsDepartment of Chemical and Biological Engineering, Drexel University, Philadelphia, Pennsylvania, 19104.
Irwin ChaikenDepartment of Biochemistry and Molecular Biology, Drexel University, Philadelphia, Pennsylvania, 19102.

Funding

Structural studies of native-like SOSIP trimersP01AI110657 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 2015 to 2024
$35.4M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
NEUTRALIZATION OF PRIMARY HIV1 VIRUSESR37AI036082 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1998 to 2017
$7.0M
NIAID NIH HHS P01 AI110657NIAID NIH HHS R37 AI036082NIGMS NIH HHS P01 GM056550
6 · The paper itself

Abstract

Peptide triazole (PT) antagonists interact with gp120 subunits of HIV-1 Env trimers to block host cell receptor interactions, trigger gp120 shedding, irreversibly inactivate virus and inhibit infection. Despite these enticing functions, understanding the structural mechanism of PT-Env trimer encounter has been limited. In this work, we combined competition interaction analysis and computational simulation to demonstrate PT binding to the recombinant soluble trimer, BG505 SOSIP.664, a stable variant that resembles native virus spikes in binding to CD4 receptor as well as known conformationally-dependent Env antibodies. Binding specificity and computational modeling fit with encounter through complementary PT pharmacophore Ile-triazolePro-Trp interaction with a 2-subsite cavity in the Env gp120 subunit of SOSIP trimer similar to that in monomeric gp120. These findings argue that PTs are able to recognize and bind a closed prefusion state of Env trimer upon HIV-1 encounter. The results provide a structural model of how PTs exert their function on virion trimeric spike protein and a platform to inform future antagonist design. Proteins 2017; 85:843-851. © 2016 Wiley Periodicals, Inc.

Indexed as

AnimalsAntibodies, ViralAntiviral AgentsBinding, CompetitiveBinding SitesCHO CellsCricetulusEnzyme-Linked Immunosorbent AssayGene ExpressionHIV-1HIV Envelope Protein gp120HumansKineticsMolecular Docking SimulationMolecular Dynamics SimulationPeptidesAntibodies, ViralAntiviral AgentsHIV Envelope Protein gp120PeptidesRecombinant ProteinsTriazolesEnv trimerHIV-1peptide triazoleSOSIPvirus inactivation

Identifiers

PMID28056499
PMCPMC5389922

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.