Evidence map›Paper›PMID 28053231›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Cryo-EM study of slow bee paralysis virus at low pH reveals iflavirus genome release mechanism.

Sergei Kalynych, Tibor Füzik, Antonín Přidal, Joachim de Miranda, Pavel Plevka

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Virion structure andJournal of virology · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Virion structure and genome delivery mechanism of sacbrood honeybee virus.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Sergei KalynychStructural Virology, Central European Institute of Technology, Masaryk University, 62500 Brno, Czech Republic.
Tibor FüzikStructural Virology, Central European Institute of Technology, Masaryk University, 62500 Brno, Czech Republic.
Antonín PřidalDepartment of Zoology, Fishery, Hydrobiology, and Apidology, Faculty of Agronomy, Mendel University in Brno, 61300 Brno, Czech Republic.
Joachim de MirandaDepartment of Ecology, Swedish University of Agricultural Sciences, 75651 Uppsala, Sweden.
Pavel PlevkaStructural Virology, Central European Institute of Technology, Masaryk University, 62500 Brno, Czech Republic; pavel.plevka@ceitec.muni.cz.
Central European Institute of Technology · CZCentral European Institute of Technology – Masaryk University · CZMendel University in Brno · CZSwedish University of Agricultural Sciences · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses from the family Iflaviridae are insect pathogens. Many of them, including slow bee paralysis virus (SBPV), cause lethal diseases in honeybees and bumblebees, resulting in agricultural losses. Iflaviruses have nonenveloped icosahedral virions containing single-stranded RNA genomes. However, their genome release mechanism is unknown. Here, we show that low pH promotes SBPV genome release, indicating that the virus may use endosomes to enter host cells. We used cryo-EM to study a heterogeneous population of SBPV virions at pH 5.5. We determined the structures of SBPV particles before and after genome release to resolutions of 3.3 and 3.4 Å, respectively. The capsids of SBPV virions in low pH are not expanded. Thus, SBPV does not appear to form "altered" particles with pores in their capsids before genome release, as is the case in many related picornaviruses. The egress of the genome from SBPV virions is associated with a loss of interpentamer contacts mediated by N-terminal arms of VP2 capsid proteins, which result in the expansion of the capsid. Pores that are 7 Å in diameter form around icosahedral threefold symmetry axes. We speculate that they serve as channels for the genome release. Our findings provide an atomic-level characterization of the genome release mechanism of iflaviruses.

Indexed as

AnimalsBeesCapsidCapsid ProteinsCryoelectron MicroscopyDicistroviridaeGenome, ViralHydrogen-Ion ConcentrationInsect VirusesModels, MolecularPicornaviridaeProtein ConformationStatic ElectricityVirus UncoatingCapsid Proteinselectron microscopyhoneybeestructureuncoatingvirus

Identifiers

PMID28053231
PMCPMC5255585
OpenAlexW2568211646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.