Evidence map›Paper›PMID 28053190›Full record

ArticleJournal of experimental botany2017

PhOBF1, a petunia ocs element binding factor, plays an important role in antiviral RNA silencing.

Daoyang Sun, Shaohua Li, Lixin Niu, Michael S Reid, Yanlong Zhang, Cai-Zhong Jiang

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

  1. Plants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. A petunia transcription factor,Horticulture research · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. International journal of molecular sciences · 2020
    Article
  8. Article
  9. Host factors against plant viruses.Molecular plant pathology · 2019
    Review
  10. Article
  11. Article
  12. SAGA complex mediates the transcriptional up-regulation of antiviral RNA silencing.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Daoyang SunDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China.
Shaohua LiDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China.
Lixin NiuDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China.
Michael S ReidDepartment of Plant Sciences, University of California Davis, Davis, CA 95616, USA.
Yanlong ZhangDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China.
Cai-Zhong JiangDepartment of Plant Sciences, University of California Davis, Davis, CA 95616, USA.
Northwest A&F University · CNUnited States Department of Agriculture · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virus-induced gene silencing (VIGS) is a common reverse genetics strategy for characterizing the function of genes in plants. The detailed mechanism governing RNA silencing efficiency triggered by viruses is largely unclear. Here, we reveal that a petunia (Petunia hybrida) ocs element binding factor, PhOBF1, one of the basic leucine zipper (bZIP) transcription factors, was up-regulated by Tobacco rattle virus (TRV) infection. Simultaneous silencing of PhOBF1 and a reporter gene, phytoene desaturase (PDS) or chalcone synthase (CHS), by TRV-based VIGS led to a failure of the development of leaf photobleaching or the white-corollas phenotype. PhOBF1 silencing caused down-regulation of RNA silencing-related genes, including RNA-dependent RNA polymerases (RDRs), Dicer-like RNase III enzymes (DCLs), and Argonautes (AGOs). After inoculation with the TRV-PhPDS, PhOBF1-RNAi lines exhibited a substantially impaired PDS silencing efficiency, whereas overexpression of PhOBF1 resulted in a recovery of the silencing phenotype (photobleaching) in systemic leaves. A compromised resistance to TRV and Tobacco mosaic virus was found in PhOBF1-RNAi lines, while PhOBF1-overexpressing lines displayed an enhanced resistance to their infections. Compared with wild-type plants, PhOBF1-silenced plants accumulated lower levels of free salicylic acid (SA), salicylic acid glucoside, and phenylalanine, contrarily to higher levels of those in plants overexpressing PhOBF1. Furthermore, transcripts of a number of genes associated with the shikimate and phenylpropanoid pathways were decreased or increased in PhOBF1-RNAi or PhOBF1-overexpressing lines, respectively. Taken together, the data suggest that PhOBF1 regulates TRV-induced RNA silencing efficiency through modulation of RDRs, DCLs, and AGOs mediated by the SA biosynthesis pathway.

Indexed as

AcyltransferasesBasic-Leucine Zipper Transcription FactorsOxidoreductasesPetuniaPlant LeavesPlant ProteinsRNA InterferenceRNA VirusesAcyltransferasesBasic-Leucine Zipper Transcription Factorsflavanone synthetaseOxidoreductasesphytoene dehydrogenasePlant ProteinsPhenylpropanoid pathwayssalicylic acid biosynthesisshikimatetobacco mosaic virustobacco rattle virustranscription factorvirus-induced gene silencing.

Identifiers

PMID28053190
PMCPMC6055658
OpenAlexW2569719767

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.