ArticleNucleic acids research2017
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.
Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-analysis of epigenome-wide association studies of carotid intima-media thickness.European journal of epidemiology · 2021Pooled it
- Epigenome-wide association meta-analysis of DNA methylation with coffee and tea consumption.Nature communications · 2021Pooled it
- WGS Data Collections: How Do Genomic Databases Transform Medicine?International journal of molecular sciences · 2023Review
- Association of Cardiovascular Health Through Young Adulthood With Genome-Wide DNA Methylation Patterns in Midlife: The CARDIA Study.Circulation · 2022Article
- emiRIT: a text-mining-based resource for microRNA information.Database : the journal of biological databases and curation · 2021Article
- Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.Structure (London, England : 1993) · 2021Article
- TCRD and Pharos 2021: mining the human proteome for disease biology.Nucleic acids research · 2021Article
- Whole Blood DNA Methylation Signatures of Diet Are Associated With Cardiovascular Disease Risk Factors and All-Cause Mortality.Circulation. Genomic and precision medicine · 2020Article
- Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.Genomics, proteomics & bioinformatics · 2020Article
- Facilities that make the PDB data collection more powerful.Protein science : a publication of the Protein Society · 2020Article
- Beyond cells - The virome in the human holobiont.Microbial cell (Graz, Austria) · 2019Review
- A Peripheral Blood DNA Methylation Signature of Hepatic Fat Reveals a Potential Causal Pathway for Nonalcoholic Fatty Liver Disease.Diabetes · 2019Article
- A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli.PLoS computational biology · 2019Article
- The Comparative Toxicogenomics Database: update 2019.Nucleic acids research · 2019Article
- 'One DB to rule them all'-the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs.Database : the journal of biological databases and curation · 2019Article
- Analysis of impact metrics for the Protein Data Bank.Scientific data · 2018Article
- Emerging whole-cell modeling principles and methods.Current opinion in biotechnology · 2018Review
- LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions.PLoS computational biology · 2018Article
- YummyData: providing high-quality open life science data.Database : the journal of biological databases and curation · 2018Article
- The CompTox Chemistry Dashboard: a community data resource for environmental chemistry.Journal of cheminformatics · 2017Article
Corrections and comments
- Erratum issued
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This year's Database Issue of Nucleic Acids Research contains 152 papers that include descriptions of 54 new databases and update papers on 98 databases, of which 16 have not been previously featured in NAR As always, these databases cover a broad range of molecular biology subjects, including genome structure, gene expression and its regulation, proteins, protein domains, and protein-protein interactions. Following the recent trend, an increasing number of new and established databases deal with the issues of human health, from cancer-causing mutations to drugs and drug targets. In accordance with this trend, three recently compiled databases that have been selected by NAR reviewers and editors as 'breakthrough' contributions, denovo-db, the Monarch Initiative, and Open Targets, cover human de novo gene variants, disease-related phenotypes in model organisms, and a bioinformatics platform for therapeutic target identification and validation, respectively. We expect these databases to attract the attention of numerous researchers working in various areas of genetics and genomics. Looking back at the past 12 years, we present here the 'golden set' of databases that have consistently served as authoritative, comprehensive, and convenient data resources widely used by the entire community and offer some lessons on what makes a successful database. The Database Issue is freely available online at the https://academic.oup.com/nar web site. An updated version of the NAR Molecular Biology Database Collection is available at http://www.oxfordjournals.org/nar/database/a/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.