Evidence map›Paper›PMID 28053049›Full record

ArticleHuman molecular genetics2017

Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels.

Bengt Sennblad, Saonli Basu, Johanna Mazur, Pierre Suchon, Angel Martinez-Perez, Astrid van Hylckama Vlieg, Vinh Truong, Yuhuang Li, Jesper R Gådin, Weihong Tang and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

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  20. Genetic association study of fatal pulmonary embolism.International journal of legal medicine · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 12 institutions in 7 countries.

Bengt SennbladCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Saonli BasuUniversity of Minnesota School of Public Health, Division of Biostatistics, MN, USA.
Johanna MazurUniversity Medical Center Mainz, Johannes Gutenberg University Mainz, Mainz, Germany.
Pierre SuchonInstitut National pour la Santé et la Recherche Médicale (INSERM), Unité Mixte de Recherche en Santé (UMR_S) 1062, Nutrition Obesity and Risk of Thrombosis, Marseille, France; Aix-Marseille University.
Angel Martinez-PerezUnitat de Genòmica de Malalties Complexes. Institut d'Investigació Biomèdica Sant Pau (IIB-Sant Pau), Barcelona, Spain.
Astrid van Hylckama VliegDepartment of Clinical Epidemiology, Leiden University Medical Center, Leiden, the Netherlands.
Vinh TruongDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.
Yuhuang LiCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Jesper R GådinCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Weihong TangUniversity of Minnesota School of Public Health, Division of Epidemiology and Community Health, Minneapolis, MN, USA.
Vera GrossmanUniversity Medical Center Mainz, Johannes Gutenberg University Mainz, Mainz, Germany.
Hugoline G de HaanDepartment of Clinical Epidemiology, Leiden University Medical Center, Leiden, the Netherlands.
Niklas HandinCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Angela SilveiraCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Juan Carlos SoutoUnitat de Trombosi i Hemostàsia, Hospital de Sant Pau, Barcelona, Spain.
Anders Franco-CerecedaDepartment of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.
Pierre-Emmanuel MorangeInstitut National pour la Santé et la Recherche Médicale (INSERM), Unité Mixte de Recherche en Santé (UMR_S) 1062, Nutrition Obesity and Risk of Thrombosis, Marseille, France; Aix-Marseille University.
France GagnonDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.
Jose Manuel SoriaUnitat de Genòmica de Malalties Complexes. Institut d'Investigació Biomèdica Sant Pau (IIB-Sant Pau), Barcelona, Spain.
Per ErikssonCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Anders HamstenCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Lars MaegdefesselCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Frits R RosendaalDepartment of Clinical Epidemiology, Leiden University Medical Center, Leiden, the Netherlands.
Philipp WildUniversity Medical Center Mainz, Johannes Gutenberg University Mainz, Mainz, Germany.
Aaron R FolsomUniversity of Minnesota School of Public Health, Division of Epidemiology and Community Health, Minneapolis, MN, USA.
David-Alexandre TrégouëtSorbonne Universités, UPMC Univ. Paris 06, INSERM, UMR_S 1166, Team Genomics & Pathophysiology of Cardiovascular Diseases, Paris, France.
Maria Sabater-LlealCardiovascular Medicine Unit, Department of Medicine, Karolinska Institutet, Stockholm, Sweden.
Karolinska Institutet · SEHospital de Sant Pau · ESLeiden University Medical Center · NLUniversity Medical Center of the Johannes Gutenberg University Mainz · DEUniversity of Minnesota · USFondation pour l’innovation en Cadiométabolisme et Nutrition · FRInserm · FRMinnesota Department of Health · USNutrition, Obésité et Risque Thrombotique · FRPublic Health Ontario · CAStockholm University · SEUniversity of Toronto · CA

Funding

Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Genome-Wide Association Analysis in Essential Hypertension (FEHGAS study)R01HL086694 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ARAVINDA CHAKRAVARTI · 2007 to 2026
$21.2M
Epidemiology of Venous Thrombosis & Pulmonary EmbolismR01HL059367 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI TANG, WEIHONG · 1998 to 2024
$11.8M
Genome-Wide Association for Loci Influencing CHD and Other Heart, Lung and BloodR01HL087641 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOERWINKLE, ERIC A. · 2006 to 2008
$3.7M
GWA for Gene-Environment Interaction Effects Influencing CHDU01HG004402 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOERWINKLE, ERIC A. · 2007 to 2009
$1.6M
NCRR NIH HHS UL1 RR025005NHGRI NIH HHS U01 HG004402NHLBI NIH HHS HHSN268201100005CNHLBI NIH HHS HHSN268201100005GNHLBI NIH HHS HHSN268201100005INHLBI NIH HHS HHSN268201100006CNHLBI NIH HHS HHSN268201100007CNHLBI NIH HHS HHSN268201100007INHLBI NIH HHS HHSN268201100008CNHLBI NIH HHS HHSN268201100008INHLBI NIH HHS HHSN268201100009CNHLBI NIH HHS HHSN268201100009INHLBI NIH HHS HHSN268201100010CNHLBI NIH HHS HHSN268201100011CNHLBI NIH HHS HHSN268201100011INHLBI NIH HHS HHSN268201100012CNHLBI NIH HHS R01 HL059367NHLBI NIH HHS R01 HL086694NHLBI NIH HHS R01 HL087641Wellcome Trust
6 · The paper itself

Abstract

Coagulation factor XI (FXI) has become increasingly interesting for its role in pathogenesis of thrombosis. While elevated plasma levels of FXI have been associated with venous thromboembolism and ischemic stroke, its deficiency is associated with mild bleeding. We aimed to determine novel genetic and post-transcriptional plasma FXI regulators.We performed a genome-wide association study (GWAS) for plasma FXI levels, using novel data imputed to the 1000 Genomes reference panel. Individual GWAS analyses, including a total of 16,169 European individuals from the ARIC, GHS, MARTHA and PROCARDIS studies, were meta-analysed and further replicated in 2,045 individuals from the F5L family, GAIT2 and MEGA studies. Additional association with activated partial thromboplastin time (aPTT) was tested for the top SNPs. In addition, a study on the effect of miRNA on FXI regulation was performed using in silico prediction tools and in vitro luciferase assays.Three loci showed robust, replicating association with circulating FXI levels: KNG1 (rs710446, P-value = 2.07 × 10-302), F11 (rs4253417, P-value  = 2.86 × 10-193), and a novel association in GCKR (rs780094, P-value  = 3.56 ×10-09), here for the first time implicated in FXI regulation. The two first SNPs (rs710446 and rs4253417) also associated with aPTT. Conditional and haplotype analyses demonstrated a complex association signal, with additional novel SNPs modulating plasma FXI levels in both the F11 and KNG1 loci. Finally, eight miRNAs were predicted to bind F11 mRNA. Over-expression of either miR-145 or miR-181 significantly reduced the luciferase activity in cells transfected with a plasmid containing FXI-3'UTR.These results should open the door to new therapeutic targets for thrombosis prevention.

Indexed as

Adaptor Proteins, Signal TransducingCell Adhesion MoleculesComputer SimulationFemaleGene Expression RegulationGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansKininogensMalePartial Thromboplastin TimePolymorphism, Single NucleotideProtein Processing, Post-TranslationalReceptors, Cell SurfaceThrombosisAdaptor Proteins, Signal TransducingCell Adhesion MoleculesF11R protein, humanGCKR protein, humanKininogensKNG1 protein, humanReceptors, Cell Surface

Identifiers

PMID28053049
PMCPMC5703348
OpenAlexW2568784163

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.