Evidence map›Paper›PMID 28052235›Full record

ArticleStructure (London, England : 1993)2017

Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.

Jamie R Wallen, Hao Zhang, Caroline Weis, Weidong Cui, Brittni M Foster, Chris M W Ho, Michal Hammel, John A Tainer, Michael L Gross, Tom Ellenberger

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural insight and characterization of human Twinkle helicase in mitochondrial disease.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Jamie R WallenDepartment of Chemistry & Physics, Western Carolina University, Cullowhee, NC 28723, USA. Electronic address: jamiewallen@email.wcu.edu.
Hao ZhangDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA.
Caroline WeisMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Weidong CuiDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA.
Brittni M FosterDepartment of Chemistry & Physics, Western Carolina University, Cullowhee, NC 28723, USA.
Chris M W HoDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Michal HammelMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
John A TainerDepartment of Molecular and Cellular Oncology, MD Anderson Cancer Center, Houston, TX 77054, USA; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Michael L GrossDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO 63130, USA.
Tom EllenbergerDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: tome@biochem.wustl.edu.
Washington University in St. Louis · USLawrence Berkeley National Laboratory · USWestern Carolina University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI YARASHESKI, KEVIN E · 2012 to 2019
$12.0M
CRYSTALLOGRAPHIC STUDIES OF DNA REPLICATION PROTEINSR01GM055390 · NIGMS · WASHINGTON UNIVERSITY · PI ELLENBERGER, TOM E. · 1997 to 2008
$3.4M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
NCI NIH HHS P01 CA092584NIGMS NIH HHS P41 GM103422NIGMS NIH HHS R01 GM055390NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

The physical organization of DNA enzymes at a replication fork enables efficient copying of two antiparallel DNA strands, yet dynamic protein interactions within the replication complex complicate replisome structural studies. We employed a combination of crystallographic, native mass spectrometry and small-angle X-ray scattering experiments to capture alternative structures of a model replication system encoded by bacteriophage T7. Two molecules of DNA polymerase bind the ring-shaped primase-helicase in a conserved orientation and provide structural insight into how the acidic C-terminal tail of the primase-helicase contacts the DNA polymerase to facilitate loading of the polymerase onto DNA. A third DNA polymerase binds the ring in an offset manner that may enable polymerase exchange during replication. Alternative polymerase binding modes are also detected by small-angle X-ray scattering with DNA substrates present. Our collective results unveil complex motions within T7 replisome higher-order structures that are underpinned by multivalent protein-protein interactions with functional implications.

Indexed as

Bacteriophage T7Binding SitesCrystallography, X-RayDNA-Directed DNA PolymeraseDNA PrimaseDNA, ViralModels, MolecularProtein BindingProtein ConformationScattering, Small AngleX-Ray DiffractionDNA-Directed DNA PolymeraseDNA PrimaseDNA, ViralDNA replicationnative mass spectrometrysmall-angle X-ray scatteringX-ray crystallography

Identifiers

PMID28052235
PMCPMC5267931
OpenAlexW2571466096

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.