Evidence map›Paper›PMID 28052101›Full record

ArticlePloS one2017

Defining Transcriptional Regulatory Mechanisms for Primary let-7 miRNAs.

Xavier Gaeta, Luat Le, Ying Lin, Yuan Xie, William E Lowry

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The multifaceted roles of microRNAs in differentiation.Current opinion in cell biology · 2020
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xavier GaetaBroad Stem Cell Center, University of California Los Angeles, Los Angeles, California, United States of America.
Luat LeMolecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, California, United States of America.
Ying LinMolecular Biology Institute, University of California Los Angeles, Los Angeles, California, United States of America.
Yuan XieMolecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, California, United States of America.
William E LowryBroad Stem Cell Center, University of California Los Angeles, Los Angeles, California, United States of America.
University of California, Los Angeles · USBroad Center · US

Funding

Roles of sumoylation and alternative polyadenylation in cellular reprogrammingP01GM099134 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HOCHEDLINGER, KONRAD · 2011 to 2021
$20.3M
The LIN28/let-7 circuit in differentiation of pluripotent stem cell progenyF31GM113641 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GAETA, XAVIER · 2015 to 2015
$27k
NIGMS NIH HHS F31 GM113641NIGMS NIH HHS P01 GM099134
6 · The paper itself

Abstract

The let-7 family of miRNAs have been shown to control developmental timing in organisms from C. elegans to humans; their function in several essential cell processes throughout development is also well conserved. Numerous studies have defined several steps of post-transcriptional regulation of let-7 production; from pri-miRNA through pre-miRNA, to the mature miRNA that targets endogenous mRNAs for degradation or translational inhibition. Less-well defined are modes of transcriptional regulation of the pri-miRNAs for let-7. let-7 pri-miRNAs are expressed in polycistronic fashion, in long transcripts newly annotated based on chromatin-associated RNA-sequencing. Upon differentiation, we found that some let-7 pri-miRNAs are regulated at the transcriptional level, while others appear to be constitutively transcribed. Using the Epigenetic Roadmap database, we further annotated regulatory elements of each polycistron identified putative promoters and enhancers. Probing these regulatory elements for transcription factor binding sites identified factors that regulate transcription of let-7 in both promoter and enhancer regions, and identified novel regulatory mechanisms for this important class of miRNAs.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell LineGene Expression RegulationHumansMicroRNAsPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionTranscription, GeneticCaenorhabditis elegans ProteinsMicroRNAsmirnlet7 microRNA, human

Identifiers

PMID28052101
PMCPMC5215532
OpenAlexW2568340249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.