Evidence map›Paper›PMID 28052061›Full record

ArticleNature2017

Integrated genomic characterization of oesophageal carcinoma.

Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre and 78 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01191697 (Phase II Trial of CAPOX, Bevacizumab and Trastuzumab for Patients With HER2-Positive Metastatic Esophagogastric Cancer), which is not on this map. Cited by 1,009 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,009citing papers in PubMed, 4 pooled it
195.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01191697 phase2completednot on this map

Phase II Trial of CAPOX, Bevacizumab and Trastuzumab for Patients With HER2-Positive Metastatic Esophagogastric Cancer

TypeinterventionalSponsorDana-Farber Cancer InstituteRan2011 to 2024Enrolled37ConditionsEsophageal Cancer, Gastric CancerArmsbevacizumab, trastuzumab, oxaliplatin, capecitabine
3 · Its place in the literature

Who cites it

1,009 citing papers in PubMed, 4 syntheses or guidelines pooled it, 1,820 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Clinical practice guidelines for esophagogastric junction cancer: Upper GI Oncology Summit 2023.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2024
    Guideline
  5. Trial
  6. Trial
  7. Trial
  8. Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
    Trial
  9. Trial
  10. Trial
  11. Trial
  12. Trial
  13. Article
  14. Review
  15. Article
  16. Article
  17. Real-world characterization of PD-L1 expression in patients with advanced esophagogastric adenocarcinoma in Spain.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Observational
  18. Article
  19. Article
  20. Article

949 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

88 authors at 20 institutions in 13 countries.

Cancer Genome Atlas Research Network
Analysis Working Group: Asan University
BC Cancer Agency
Brigham and Women’s Hospital
Broad Institute
Brown University
Case Western Reserve University
Dana-Farber Cancer Institute
Duke University
Greater Poland Cancer Centre
Harvard Medical School
Institute for Systems Biology
KU Leuven
Mayo Clinic
Memorial Sloan Kettering Cancer Center
National Cancer Institute
Nationwide Children’s Hospital
Stanford University
University of Alabama
University of Michigan
University of North Carolina
University of Pittsburgh
University of Rochester
University of Southern California
University of Texas MD Anderson Cancer Center
University of Washington
Van Andel Research Institute
Vanderbilt University
Washington University
Genome Sequencing Center: Broad Institute
Washington University in St. Louis
Genome Characterization Centers: BC Cancer Agency
Broad Institute
Harvard Medical School
Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University
University of North Carolina
University of Southern California Epigenome Center
University of Texas MD Anderson Cancer Center
Van Andel Research Institute
Genome Data Analysis Centers: Broad Institute
Brown University:
Harvard Medical School
Institute for Systems Biology
Memorial Sloan Kettering Cancer Center
University of California Santa Cruz
University of Texas MD Anderson Cancer Center
Biospecimen Core Resource: International Genomics Consortium
Research Institute at Nationwide Children’s Hospital
Tissue Source Sites: Analytic Biologic Services
Asan Medical Center
Asterand Bioscience
Barretos Cancer Hospital
BioreclamationIVT
Botkin Municipal Clinic
Chonnam National University Medical School
Christiana Care Health System
Cureline
Duke University
Emory University
Erasmus University
Indiana University School of Medicine
Institute of Oncology of Moldova
International Genomics Consortium
Invidumed
Israelitisches Krankenhaus Hamburg
Keimyung University School of Medicine
Memorial Sloan Kettering Cancer Center
National Cancer Center Goyang
Ontario Tumour Bank
Peter MacCallum Cancer Centre
Pusan National University Medical School
Ribeirão Preto Medical School
St. Joseph’s Hospital &Medical Center
St. Petersburg Academic University
Tayside Tissue Bank
University of Dundee
University of Kansas Medical Center
University of Michigan
University of North Carolina at Chapel Hill
University of Pittsburgh School of Medicine
University of Texas MD Anderson Cancer Center
Disease Working Group: Duke University
Memorial Sloan Kettering Cancer Center
National Cancer Institute
University of Texas MD Anderson Cancer Center
Yonsei University College of Medicine
Data Coordination Center: CSRA Inc.
Project Team: National Institutes of Health
Eli and Edythe Broad Foundation · USThe University of Texas MD Anderson Cancer Center · USMemorial Sloan Kettering Cancer Center · USHarvard University · USBroad Institute · USCanada's Michael Smith Genome Sciences Centre · CANational Cancer Institute · USJames S. McDonnell Foundation · USNationwide Children's Hospital · USTranslational Genomics Research Institute · USBC Cancer Agency · CAInstitute for Systems Biology · USDana-Farber Cancer Institute · USEmory University · USUniversidade de São Paulo · BRPrincess Margaret Cancer Centre · CABrigham and Women's Hospital · USBrown University · USDuke University · USErasmus MC Cancer Institute · NL

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Gene Expression Patterns in Human Tumors Identified Using Transcript SequencingU24CA143848 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, PEROU, CHARLES M · 2009 to 2016
$20.8M
Genome Characterization Center (GCC)U24CA143867 · NCI · BROAD INSTITUTE, INC. · PI GABRIEL, STACEY, MEYERSON, MATTHEW L. · 2009 to 2016
$17.0M
The Cancer Genome Atlas Data Analysis CenterU24CA143845 · NCI · BROAD INSTITUTE, INC. · PI CHIN, LYNDA, GETZ, GAD A · 2009 to 2016
$16.0M
Harvard Genome Characterization CenterU24CA144025 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI KUCHERLAPATI, RAJU S. · 2009 to 2016
$14.0M
Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
The USC-JHU Cancer Epigenome Characterization CenterU24CA143882 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BAYLIN, STEPHEN B., WEISENBERGER, DANIEL JOSEPH · 2009 to 2016
$13.3M
NCATS NIH HHS UL1 TR000371NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016672NCI NIH HHS T32 CA009676NCI NIH HHS U24 CA126543NCI NIH HHS U24 CA126544NCI NIH HHS U24 CA143799NCI NIH HHS U24 CA143835NCI NIH HHS U24 CA143840NCI NIH HHS U24 CA143843NCI NIH HHS U24 CA143845NCI NIH HHS U24 CA143848NCI NIH HHS U24 CA143858NCI NIH HHS U24 CA143866NCI NIH HHS U24 CA143867NCI NIH HHS U24 CA143882NCI NIH HHS U24 CA143883NCI NIH HHS U24 CA144025NCI NIH HHS U24 CA199461NCI NIH HHS U24 CA210949NCI NIH HHS U24 CA210950NCI NIH HHS U24 CA210969NCI NIH HHS U24 CA210999NCI NIH HHS U24 CA211000NHGRI NIH HHS U54 HG003067NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54 HG003273NIEHS NIH HHS P30 ES010126NIH HHS 5U24CA143799NIH HHS 5U24CA143835NIH HHS 5U24CA143840NIH HHS 5U24CA143843NIH HHS 5U24CA143845NIH HHS 5U24CA143848NIH HHS 5U24CA143858NIH HHS 5U24CA143866NIH HHS 5U24CA143867NIH HHS 5U24CA143882NIH HHS 5U24CA143883
6 · The paper itself

Abstract

Oesophageal cancers are prominent worldwide; however, there are few targeted therapies and survival rates for these cancers remain dismal. Here we performed a comprehensive molecular analysis of 164 carcinomas of the oesophagus derived from Western and Eastern populations. Beyond known histopathological and epidemiologic distinctions, molecular features differentiated oesophageal squamous cell carcinomas from oesophageal adenocarcinomas. Oesophageal squamous cell carcinomas resembled squamous carcinomas of other organs more than they did oesophageal adenocarcinomas. Our analyses identified three molecular subclasses of oesophageal squamous cell carcinomas, but none showed evidence for an aetiological role of human papillomavirus. Squamous cell carcinomas showed frequent genomic amplifications of CCND1 and SOX2 and/or TP63, whereas ERBB2, VEGFA and GATA4 and GATA6 were more commonly amplified in adenocarcinomas. Oesophageal adenocarcinomas strongly resembled the chromosomally unstable variant of gastric adenocarcinoma, suggesting that these cancers could be considered a single disease entity. However, some molecular features, including DNA hypermethylation, occurred disproportionally in oesophageal adenocarcinomas. These data provide a framework to facilitate more rational categorization of these tumours and a foundation for new therapies.

Indexed as

GenomicsAdenocarcinomaCarcinoma, Squamous CellEsophageal NeoplasmsEsophageal Squamous Cell CarcinomaGenome, HumanHumansMolecular Targeted TherapyMutationStomach Neoplasms

Identifiers

PMID28052061
PMCPMC5651175
OpenAlexW2570401594

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.