Evidence map›Paper›PMID 28049852›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

In vivo severity ranking of Ras pathway mutations associated with developmental disorders.

Granton A Jindal, Yogesh Goyal, Kei Yamaya, Alan S Futran, Iason Kountouridis, Courtney A Balgobin, Trudi Schüpbach, Rebecca D Burdine, Stanislav Y Shvartsman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 64 citations in OpenAlex.

  1. SHOC2 Is a Novel Cause of Central Conducting Lymphatic Anomaly.American journal of medical genetics. Part A · 2026
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  9. Evolutionary history of MEK1 illuminates the nature of deleterious mutations.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  16. Review
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  18. The RASopathies: from pathogenetics to therapeutics.Disease models & mechanisms · 2022
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Granton A JindalDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.ORCID 0000-0003-2803-9831
Yogesh GoyalDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.
Kei YamayaLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
Alan S FutranDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.
Iason KountouridisLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
Courtney A BalgobinDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Trudi SchüpbachDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Rebecca D BurdineDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544; stas@princeton.edu.
Princeton University · US

Funding

EGF receptor mediated signaling in DrosphiliaR01GM077620 · NIGMS · PRINCETON UNIVERSITY · PI SCHUPBACH, GERTRUD TRUDI · 2007 to 2018
$3.9M
Connecting Polycystin Signaling to Asymmetric Nodal ExpressionR01HD048584 · NICHD · PRINCETON UNIVERSITY · PI BURDINE, REBECCA D. · 2007 to 2016
$3.5M
Systems biology of MAPK signaling in early drosophila embryoR01GM086537 · NIGMS · PRINCETON UNIVERSITY · PI BURDINE, REBECCA D., GOLDSMITH, ELIZABETH J. · 2011 to 2018
$3.1M
NICHD NIH HHS R01 HD048584NIGMS NIH HHS R01 GM077620NIGMS NIH HHS R01 GM086537
6 · The paper itself

Abstract

Germ-line mutations in components of the Ras/MAPK pathway result in developmental disorders called RASopathies, affecting about 1/1,000 human births. Rapid advances in genome sequencing make it possible to identify multiple disease-related mutations, but there is currently no systematic framework for translating this information into patient-specific predictions of disease progression. As a first step toward addressing this issue, we developed a quantitative, inexpensive, and rapid framework that relies on the early zebrafish embryo to assess mutational effects on a common scale. Using this assay, we assessed 16 mutations reported in MEK1, a MAPK kinase, and provide a robust ranking of these mutations. We find that mutations found in cancer are more severe than those found in both RASopathies and cancer, which, in turn, are generally more severe than those found only in RASopathies. Moreover, this rank is conserved in other zebrafish embryonic assays and Drosophila-specific embryonic and adult assays, suggesting that our ranking reflects the intrinsic property of the mutant molecule. Furthermore, this rank is predictive of the drug dose needed to correct the defects. This assay can be readily used to test the strengths of existing and newly found mutations in MEK1 and other pathway components, providing the first step in the development of rational guidelines for patient-specific diagnostics and treatment of RASopathies.

Indexed as

AnimalsAnimals, Genetically ModifiedDevelopmental DisabilitiesDose-Response Relationship, DrugDrosophila melanogasterDrosophila ProteinsHumansMAP Kinase Kinase 1MAP Kinase Signaling SystemMutationPhenotypeProtein Kinase Inhibitorsras ProteinsZebrafishZebrafish ProteinsDrosophila ProteinsMAP Kinase Kinase 1Protein Kinase Inhibitorsras ProteinsZebrafish ProteinsDrosophilaMEK1MEK inhibitorRASopathieszebrafish

Identifiers

PMID28049852
PMCPMC5255624
OpenAlexW2565755607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.