Evidence map›Paper›PMID 28049850›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Resolution of single and double Holliday junction recombination intermediates by GEN1.

Rajvee Shah Punatar, Maria Jose Martin, Haley D M Wyatt, Ying Wai Chan, Stephen C West

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. DNA Holliday Junction: History, Regulation and Bioactivity.International journal of molecular sciences · 2022
    Review
  9. Review
  10. Generation of double Holliday junction DNAs and their dissolution/resolution within a chromatin context.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
  13. Meiotic Recombination Defects and Premature Ovarian Insufficiency.Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Review
  16. DNA Damage Response and Oxidative Stress in Systemic Autoimmunity.International journal of molecular sciences · 2019
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rajvee Shah PunatarDNA Recombination and Repair Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Maria Jose MartinDNA Recombination and Repair Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Haley D M WyattDNA Recombination and Repair Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Ying Wai ChanDNA Recombination and Repair Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Stephen C WestDNA Recombination and Repair Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom stephen.west@crick.ac.uk.ORCID 0000-0001-8848-9418
The Francis Crick Institute · GB

Funding

Cancer Research UK 11582Wellcome TrustWellcome Trust FC10212
6 · The paper itself

Abstract

Genetic recombination provides an important mechanism for the repair of DNA double-strand breaks. Homologous pairing and strand exchange lead to the formation of DNA intermediates, in which sister chromatids or homologous chromosomes are covalently linked by four-way Holliday junctions (HJs). Depending on the type of recombination reaction that takes place, intermediates may have single or double HJs, and their resolution is essential for proper chromosome segregation. In mitotic cells, double HJs are primarily dissolved by the BLM helicase-TopoisomeraseIIIα-RMI1-RMI2 (BTR) complex, whereas single HJs (and double HJs that have escaped the attention of BTR) are resolved by structure-selective endonucleases known as HJ resolvases. These enzymes are ubiquitous in nature, because they are present in bacteriophage, bacteria, archaea, and simple and complex eukaryotes. The human HJ resolvase GEN1 is a member of the XPG/Rad2 family of 5'-flap endonucleases. Biochemical studies of GEN1 revealed that it cleaves synthetic DNA substrates containing a single HJ by a mechanism similar to that shown by the prototypic HJ resolvase, Escherichia coli RuvC protein, but it is unclear whether these substrates fully recapitulate the properties of recombination intermediates that arise within a physiological context. Here, we show that GEN1 efficiently cleaves both single and double HJs contained within large recombination intermediates. Moreover, we find that GEN1 exhibits a weak sequence preference for incision between two G residues that reside in a T-rich region of DNA. These results contrast with those obtained with RuvC, which exhibits a strict requirement for the consensus sequence 5'-

Indexed as

Base SequenceDNA, CruciformDNA RepairEndodeoxyribonucleasesEscherichia coli ProteinsHolliday Junction ResolvasesHomologous RecombinationHumansModels, MolecularNucleic Acid ConformationProtein ConformationRecombinant ProteinsSubstrate SpecificityDNA, CruciformEndodeoxyribonucleasesEscherichia coli ProteinsGEN1 protein, humanHolliday Junction ResolvasesRecombinant ProteinsruvC protein, E coliRecArecombinationrepairresolvaseRuvC

Identifiers

PMID28049850
PMCPMC5255610
OpenAlexW2566141085

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.