Evidence map›Paper›PMID 28049589›Full record

ArticleBioorganic & medicinal chemistry letters2017

A triple exon-skipping luciferase reporter assay identifies a new CLK inhibitor pharmacophore.

Yihui Shi, Jaehyeon Park, Chandraiah Lagisetti, Wei Zhou, Lidia C Sambucetti, Thomas R Webb

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

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  14. More than a messenger: Alternative splicing as a therapeutic target.Biochimica et biophysica acta. Gene regulatory mechanisms
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yihui ShiDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA.
Jaehyeon ParkDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA.
Chandraiah LagisettiDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA.
Wei ZhouDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA.
Lidia C SambucettiDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA.
Thomas R WebbDivision of Biosciences, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, USA. Electronic address: thomas.webb@sri.com.
SRI International · US

Funding

Synthetic Spliceosome Probes and ModulatorsR01CA140474 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBB, THOMAS ROY · 2010 to 2014
$1.7M
Triple-exon Reporter HTS Screen: Discovery of Novel Pre-mRNA Splicing ModulatorsR01CA214759 · NCI · SRI INTERNATIONAL · PI SAMBUCETTI, LIDIA C · 2017 to 2019
$1.2M
NCI NIH HHS R01 CA140474NCI NIH HHS R01 CA214759
6 · The paper itself

Abstract

The splicing of pre-mRNA is a critical process in normal cells and is deregulated in cancer. Compounds that modulate this process have recently been shown to target a specific vulnerability in tumors. We have developed a novel cell-based assay that specifically activates luciferase in cells exposed to SF3B1 targeted compounds, such as sudemycin D6. This assay was used to screen a combined collection of approved drugs and bioactive compounds. This screening approach identified several active hits, the most potent of which were CGP-74514A and aminopurvalanol A, both have been reported to be cyclin-dependent kinases (CDKs) inhibitors. We found that these compounds, and their analogs, show significant cdc2-like kinase (CLK) inhibition and clear structure-activity relationships (SAR) at CLKs. We prepared a set of analogs and were able to 'dial out' the CDK activity and simultaneously developed CLK inhibitors with low nanomolar activity. Thus, we have demonstrated the utility of our exon-skipping assay and identified new molecules that exhibit potency and selectivity for CLK, as well as some structurally related dual CLK/CDK inhibitors.

Indexed as

2-AminopurineAdenineBinding SitesCyclin-Dependent KinasesExonsGenes, ReporterHigh-Throughput Screening AssaysHumansInhibitory Concentration 50LuciferasesMolecular Dynamics SimulationProtein BindingProtein Kinase InhibitorsProtein Structure, TertiaryRNA SplicingStructure-Activity Relationship2-AminopurineAdenineaminopurvalanol ACyclin-Dependent KinasesLuciferasesN(2)-(2-aminocyclohexyl)-N(6)-(3-chlorophenyl)-9-ethyl-9H-purine-2,6-diamineProtein Kinase InhibitorsAnti-tumor agentsCdc-like kinase (CLK) inhibitorsHigh throughput screeningModulators of pre-mRNA splicing

Identifiers

PMID28049589
PMCPMC5295499
OpenAlexW2562256032

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.