Evidence map›Paper›PMID 28049427›Full record

ArticleBMC genomics2017

Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora.

Jonathan Vadnal, Ramesh Ratnappan, Melissa Keaney, Eric Kenney, Ioannis Eleftherianos, Damien O'Halloran, John M Hawdon

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Genes · 2025
    Article
  2. Article
  3. Review
  4. The Activin Branch Ligand Daw Regulates theInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Article
  7. Molecular Regulators of Entomopathogenic Nematode-Bacterial Symbiosis.Results and problems in cell differentiation · 2020
    Review
  8. Frontiers in immunology · 2019
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jonathan VadnalDepartment of Biological Sciences, George Washington University, Science and Engineering Hall, suite 6000, 800 22nd Street NW, Washington DC, 20052, USA.
Ramesh RatnappanDepartment of Microbiology Immunology and Tropical Medicine, George Washington University Medical Center, Washington DC, 20037, USA.
Melissa KeaneyDepartment of Microbiology Immunology and Tropical Medicine, George Washington University Medical Center, Washington DC, 20037, USA.
Eric KenneyDepartment of Biological Sciences, George Washington University, Science and Engineering Hall, suite 6000, 800 22nd Street NW, Washington DC, 20052, USA.
Ioannis EleftherianosDepartment of Biological Sciences, George Washington University, Science and Engineering Hall, suite 6000, 800 22nd Street NW, Washington DC, 20052, USA. ioannise@gwu.edu.
Damien O'HalloranDepartment of Biological Sciences, George Washington University, Science and Engineering Hall, suite 6000, 800 22nd Street NW, Washington DC, 20052, USA. damienoh@gwu.edu.
John M HawdonDepartment of Microbiology Immunology and Tropical Medicine, George Washington University Medical Center, Washington DC, 20037, USA. jhawdon@gwu.edu.
George Washington University · USWashington University Medical Center · US

Funding

Developing genetic tools for a new model of infection and immunityR21AI109517 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI ELEFTHERIANOS, IOANNIS, HAWDON, JOHN M · 2014 to 2015
$431k
NIAID NIH HHS R21 AI109517
6 · The paper itself

Abstract

backgroundDespite important progress in the field of innate immunity, our understanding of host immune responses to parasitic nematode infections lags behind that of responses to microbes. A limiting factor has been the obligate requirement for a vertebrate host which has hindered investigation of the parasitic nematode infective process. The nematode parasite Heterorhabditis bacteriophora offers great potential as a model to genetically dissect the process of infection. With its mutualistic Photorhabdus luminescens bacteria, H. bacteriophora invades multiple species of insects, which it kills and exploits as a food source for the development of several nematode generations. The ability to culture the life cycle of H. bacteriophora on plates growing the bacterial symbiont makes it a very exciting model of parasitic infection that can be used to unlock the molecular events occurring during infection of a host that are inaccessible using vertebrate hosts.

resultsTo profile the transcriptional response of an infective nematode during the early stage of infection, we performed next generation RNA sequencing on H. bacteriophora IJs incubated in Manduca sexta hemolymph plasma for 9 h. A subset of up-regulated and down-regulated genes were validated using qRT-PCR. Comparative analysis of the transcriptome with untreated controls found a number of differentially expressed genes (DEGs) which cover a number of different functional categories. A subset of DEGs is conserved across Clade V parasitic nematodes revealing an array of candidate parasitic genes.

conclusionsOur analysis reveals transcriptional changes in the regulation of a large number of genes, most of which have not been shown previously to play a role in the process of infection. A significant proportion of these genes are unique to parasitic nematodes, suggesting the identification of a group of parasitism factors within nematodes. Future studies using these candidates may provide functional insight into the process of nematode parasitism and also the molecular evolution of parasitism within nematodes.

Indexed as

Gene Expression ProfilingGenes, HelminthTranscriptomeAnimalsComputational BiologyGene OntologyHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsMolecular Sequence AnnotationReproducibility of ResultsRhabditida InfectionsRhabditoideaHemolymphHeterorhabditis bacteriophoraNematodeParasitismRNA-seq

Identifiers

PMID28049427
PMCPMC5209865
OpenAlexW2563488706

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.