Evidence map›Paper›PMID 28046031›Full record

ArticlePloS one2017

Confirmation of the OVOL2 Promoter Mutation c.-307T>C in Posterior Polymorphous Corneal Dystrophy 1.

Doug D Chung, Ricardo F Frausto, Aleck E Cervantes, Katherine M Gee, Marina Zakharevich, Evelyn M Hanser, Edwin M Stone, Elise Heon, Anthony J Aldave

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Update on the genetics of corneal endothelial dystrophies.Indian journal of ophthalmology · 2022
    Review
  4. Diseases of the corneal endothelium.Experimental eye research · 2021
    Review
  5. CUGC for posterior polymorphous corneal dystrophy (PPCD).European journal of human genetics : EJHG · 2020
    Article
  6. Article
  7. Article
  8. Transcriptomic Profiling of Posterior Polymorphous Corneal Dystrophy.Investigative ophthalmology & visual science · 2017
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Doug D ChungStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.ORCID http://orcid.org/0000-0002-8505-9495
Ricardo F FraustoStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
Aleck E CervantesStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
Katherine M GeeStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
Marina ZakharevichStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
Evelyn M HanserStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
Edwin M StoneDepartment of Ophthalmology, University of Iowa Carver College of Medicine, Iowa City, Iowa, United States of America.
Elise HeonDepartment of Ophthalmology and Vision Sciences, The Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.
Anthony J AldaveStein Eye Institute, David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, California, United States of America.
University of California, Los Angeles · USUniversity of Iowa · USUniversity of Toronto · CA

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Xian-Jie Yang · 1985 to 2026
$16.8M
Identification and Characterization of the Genetic Basis of PPCDR01EY022082 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALDAVE, ANTHONY JOHN · 2013 to 2017
$1.9M
NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY022082
6 · The paper itself

Abstract

purposeTo identify the genetic basis of posterior polymorphous corneal dystrophy (PPCD) in families mapped to the PPCD1 locus and in affected individuals without ZEB1 coding region mutations.

methodsThe promoter, 5' UTR, and coding regions of OVOL2 was screened in the PPCD family in which linkage analysis established the PPCD1 locus and in 26 PPCD probands who did not harbor a ZEB1 mutation. Copy number variation (CNV) analysis in the PPCD1 and PPCD3 intervals was performed on DNA samples from eight probands using aCGH. Luciferase reporter assays were performed in human corneal endothelial cells to determine the impact of the identified potentially pathogenic variants on OVOL2 promoter activity.

resultsOVOL2 mutation analysis in the first PPCD1-linked family demonstrated segregation of the c.-307T>C variant with the affected phenotype. In the other 26 probands screened, one heterozygous coding region variant and five promoter region heterozygous variants were identified, though none are likely pathogenic based on allele frequency. Array CGH in the PPCD1 and PPCD3 loci excluded the presence of CNV involving either OVOL2 or ZEB1, respectively. The c.-307T>C variant demonstrated increased promoter activity in corneal endothelial cells when compared to the wild-type sequence as has been demonstrated previously in another cell type.

conclusionsPreviously identified as the cause of PPCD1, the OVOL2 promoter variant c.-307T>C was herein identified in the original family that established the PPCD1 locus. However, the failure to identify presumed pathogenic coding or non-coding OVOL2 or ZEB1 variants, or CNV involving the PPCD1 and PPCD3 loci in 26 other PPCD probands suggests that other genetic loci may be involved in the pathogenesis of PPCD.

Indexed as

Promoter Regions, Genetic5' Untranslated RegionsCell LineChromosome SegregationChromosomes, Human, Pair 20Corneal Dystrophies, HereditaryDNA Copy Number VariationsFamilyFemaleGenetic LociHumansMaleMutationPedigreeReproducibility of ResultsTranscription Factors5' Untranslated RegionsOvol2 protein, humanTranscription FactorsZEB1 protein, humanZinc Finger E-box-Binding Homeobox 1

Identifiers

PMID28046031
PMCPMC5207508
OpenAlexW2569885821

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.