Evidence map›Paper›PMID 28045588›Full record

ArticleRNA biology2017

Global decay of mRNA is a hallmark of apoptosis in aging Xenopus eggs.

Alexander A Tokmakov, Sho Iguchi, Tetsushi Iwasaki, Yasuo Fukami, Ken-Ichi Sato

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. [Role of PNPT1 in cardiomyocyte apoptosis induced by oxygen-glucose deprivation].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022
    Article
  2. Article
  3. Toward the understanding of biology of oocyte life cycle inReproductive medicine and biology · 2020
    Review
  4. Dissection of the Ovulatory Process UsingFrontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Alexander A Tokmakova Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo Motoyama , Kita ku , Kyoto , Japan.
Sho Iguchib Graduate School of Science, Kobe University, Rokko dai , Nada , Kobe , Japan.
Tetsushi Iwasakib Graduate School of Science, Kobe University, Rokko dai , Nada , Kobe , Japan.
Yasuo Fukamib Graduate School of Science, Kobe University, Rokko dai , Nada , Kobe , Japan.
Ken-Ichi Satoa Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo Motoyama , Kita ku , Kyoto , Japan.
Kobe University · JPKyoto Sangyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytoplasmic mRNAs are specifically degraded in somatic cells as a part of early apoptotic response. However, no reports have been presented so far concerning mRNA fate in apoptotic gametes. In the present study, we analyzed the content of various cytoplasmic mRNAs in aging oocytes and eggs of the African clawed frog, Xenopus laevis. To circumvent large gene expression variation among the individual oocytes and eggs, single-cell monitoring of transcript levels has been implemented, using multiple cytoplasmic collections and reverse transcriptase quantitative PCR. It was found that numerous cytoplasmic mRNAs, coding for proteins classified in different functional types, are robustly degraded in apoptotic Xenopus eggs, but not in aging oocytes. mRNA degradation becomes evident in the eggs after meiotic exit at the time of cytochrome c release. A strong correlation between the length of PCR amplicon and specific transcript content was observed, suggesting endonucleolytic cleavage of mRNA. In addition, it was found that mRNA deadenylation also contributes to apoptotic mRNA degradation. Altogether, these findings indicate that the global decay of mRNA represents a hallmark of apoptosis in aging Xenopus eggs. To our knowledge, this is the first description of mRNA degradation in apoptotic gamete cells.

Indexed as

RNA StabilityAnimalsApoptosisBiomarkersCellular SenescenceGene Expression ProfilingGene Expression RegulationOocytesPoly ARNA, MessengerXenopusBiomarkersPoly ARNA, MessengerApoptosisdeadenylationendonucleolytic decaymRNAsingle-cell analysisXenopus eggs

Identifiers

PMID28045588
PMCPMC5367254
OpenAlexW2564146961

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.