Evidence map›Paper›PMID 28045069›Full record

ArticleScientific reports2017

Local alignment vectors reveal cancer cell-induced ECM fiber remodeling dynamics.

Byoungkoo Lee, Jessica Konen, Scott Wilkinson, Adam I Marcus, Yi Jiang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

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  9. Reaching the Tumor: Mobility of Polymeric Micelles Inside anACS applied materials & interfaces · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Byoungkoo LeeDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
Jessica KonenCancer Biology Graduate Program, Emory University, Atlanta, GA, USA.
Scott WilkinsonCancer Biology Graduate Program, Emory University, Atlanta, GA, USA.
Adam I MarcusDepartment of Hematology and Oncology, Emory University, Atlanta, GA, USA.
Yi JiangDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
Emory University · USGeorgia State University · US

Funding

Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Suresh S Ramalingam · 2009 to 2026
$47.5M
Multiscale Modeling of ECM-tumor interactions in Breast CancerU01CA143069 · NCI · VANDERBILT UNIVERSITY · PI JIANG, YI, KEELY, PATRICIA J · 2011 to 2015
$2.3M
Defining Early Escape Strategies in LKB1 Mutant Lung Cancer S1R01CA201340 · NCI · EMORY UNIVERSITY · PI GILBERT-ROSS, MELISSA, MARCUS, ADAM I. · 2016 to 2020
$2.0M
Defining an LKB1-regulated motility switch in cancer cell invasion and metastasisF31CA180511 · NCI · EMORY UNIVERSITY · PI KONEN, JESSICA · 2014 to 2016
$118k
Defining the role of farnesylated LKB1 in regulating cell polarity and invasionF31CA200383 · NCI · EMORY UNIVERSITY · PI WILKINSON, SCOTT · 2015 to 2016
$87k
NCI NIH HHS F31 CA180511NCI NIH HHS F31 CA200383NCI NIH HHS P30 CA138292NCI NIH HHS R01 CA201340NCI NIH HHS U01 CA143069
6 · The paper itself

Abstract

Invasive cancer cells interact with the surrounding extracellular matrix (ECM), remodeling ECM fiber network structure by condensing, degrading, and aligning these fibers. We developed a novel local alignment vector analysis method to quantitatively measure collagen fiber alignment as a vector field using Circular Statistics. This method was applied to human non-small cell lung carcinoma (NSCLC) cell lines, embedded as spheroids in a collagen gel. Collagen remodeling was monitored using second harmonic generation imaging under normal conditions and when the LKB1-MARK1 pathway was disrupted through RNAi-based approaches. The results showed that inhibiting LKB1 or MARK1 in NSCLC increases the collagen fiber alignment and captures outward alignment vectors from the tumor spheroid, corresponding to high invasiveness of LKB1 mutant cancer cells. With time-lapse imaging of ECM micro-fiber morphology, the local alignment vector can measure the dynamic signature of invasive cancer cell activity and cell-migration-induced ECM and collagen remodeling and realigning dynamics.

Indexed as

AMP-Activated Protein Kinase KinasesCarcinoma, Non-Small-Cell LungCell Line, TumorCollagenData Interpretation, StatisticalExtracellular MatrixHumansImage Processing, Computer-AssistedMicroscopy, Fluorescence, MultiphotonProtein Serine-Threonine KinasesAMP-Activated Protein Kinase KinasesCollagenMARK1 protein, humanProtein Serine-Threonine KinasesSTK11 protein, human

Identifiers

PMID28045069
PMCPMC5206731
OpenAlexW2563587937

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.