Evidence map›Paper›PMID 28044981›Full record

ArticleeLife2017

Differential methylation between ethnic sub-groups reflects the effect of genetic ancestry and environmental exposures.

Joshua M Galanter, Christopher R Gignoux, Sam S Oh, Dara Torgerson, Maria Pino-Yanes, Neeta Thakur, Celeste Eng, Donglei Hu, Scott Huntsman, Harold J Farber and 12 more

Abstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 9 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 9 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Genetic ancestry is associated with asthma, and this could be modified by environmental factors. A systematic review.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2023
    Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Pooled it
  10. Trial
  11. Trial
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Joshua M GalanterDepartment of Medicine, University of California, San Francisco, United States.ORCID 0000-0002-2561-6384
Christopher R GignouxDepartment of Genetics, Stanford University, Stanford, United States.ORCID 0000-0001-9728-6567
Sam S OhDepartment of Medicine, University of California, San Francisco, United States.ORCID 0000-0002-2815-6037
Dara TorgersonDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, United States.
Maria Pino-YanesHospital Universitario Nuestra Señora de Candelaria, Tenerife, Spain.ORCID 0000-0003-0332-437X
Neeta ThakurDepartment of Medicine, University of California, San Francisco, United States.ORCID 0000-0001-6126-6601
Celeste EngDepartment of Medicine, University of California, San Francisco, United States.
Donglei HuDepartment of Medicine, University of California, San Francisco, United States.
Scott HuntsmanDepartment of Medicine, University of California, San Francisco, United States.
Harold J FarberDepartment of Pediatrics, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas.
Pedro C AvilaDivision of Allergy and Immunology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.
Emerita Brigino-BuenaventuraKaiser Permanente-Vallejo Medical Center, Vallejo, United States.
Michael A LeNoirBay Area Pediatrics, Oakland, United States.
Kelly MeadeDepartment of Pediatrics, Children's Hospital and Research Center, Oakland, United States.
Denise SerebriskyJacobi Medical Center, Bronx, United States.
William Rodríguez-CintrónVeterans Caribbean Health System, San Juan, United States.
Rajesh KumarDivision of Allergy and Immunology, The Ann and Robert H Lurie Children's Hospital of Chicago, Chicago, United States.
Jose R Rodríguez-SantanaCentro de Neumología Pediátrica, San Juan, United States.
Max A SeiboldCenter for Genes, Environment, and Health, Department of Pediatrics, National Jewish Health, Denver, United States.
Luisa N BorrellGraduate School of Public Health and Health Policy, City University of New York, New York, United States.
Esteban G BurchardDepartment of Medicine, University of California, San Francisco, United States.ORCID 0000-0001-7475-2035
Noah ZaitlenDepartment of Medicine, University of California, San Francisco, United States.

Funding

UCSF Career Development Program in Omics of Lung DiseasesK12HL119997 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ, ERLE, DAVID J · 2013 to 2017
$1.4M
Social adversities and asthma: a new phenotype?K23HL125551 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THAKUR, NEETA · 2016 to 2020
$1.0M
Wood Smoke and Genetic Susceptibility to Asthma in An Honduran PopulationK23HL111636 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GALANTER, JOSHUA MARK · 2012 to 2016
$832k
Richer Models of Asthma Risk: Bridging the Environment-Genetics DivideK25HL121295 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZAITLEN, NOAH A · 2014 to 2018
$784k
NHLBI NIH HHS K12 HL119997NHLBI NIH HHS K23 HL111636NHLBI NIH HHS K23 HL125551NHLBI NIH HHS K25 HL121295
6 · The paper itself

Abstract

Populations are often divided categorically into distinct racial/ethnic groups based on social rather than biological constructs. Genetic ancestry has been suggested as an alternative to this categorization. Herein, we typed over 450,000 CpG sites in whole blood of 573 individuals of diverse Hispanic origin who also had high-density genotype data. We found that both self-identified ethnicity and genetically determined ancestry were each significantly associated with methylation levels at 916 and 194 CpGs, respectively, and that shared genomic ancestry accounted for a median of 75.7% (IQR 45.8% to 92%) of the variance in methylation associated with ethnicity. There was a significant enrichment (p=4.2×10

Indexed as

DNA MethylationEnvironmental ExposureEthnicityHispanic or LatinoEpigenesis, GeneticHumanschromosomesepigeneticsethnicitygeneshumanhuman biologyLatinosmedicinemethylation

Identifiers

PMID28044981
PMCPMC5207770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.