Evidence map›Paper›PMID 28044264›Full record

ArticleJournal of gastrointestinal cancer2018

Clinicopathological Associations of K-RAS and N-RAS Mutations in Indonesian Colorectal Cancer Cohort.

Michael Levi, Gintang Prayogi, Farid Sastranagara, Edi Sudianto, Grace Widjajahakim, Winiarti Gani, Albert Mahanadi, Jocelyn Agnes, Bela Haifa Khairunisa, Ahmad R Utomo

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Article in Journal of gastrointestinal cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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  10. The Correlation ofOpen access Macedonian journal of medical sciences · 2019
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  11. Impact of smoking on frequency and spectrum ofLung Cancer (Auckland, N.Z.) · 2019
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  12. UncommonLung Cancer (Auckland, N.Z.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Michael LeviKalbe Genomics Laboratory, Jl. Ahmad Yani No. 2, Pulomas, Jakarta, Indonesia.
Gintang PrayogiCancer Diagnostic, Stem-cell and Cancer Institute, Komplek Bintang Toedjoe Pulomas, Jakarta, Indonesia.
Farid SastranagaraKalbe Genomics Laboratory, Jl. Ahmad Yani No. 2, Pulomas, Jakarta, Indonesia.
Edi SudiantoKalbe Genomics Laboratory, Jl. Ahmad Yani No. 2, Pulomas, Jakarta, Indonesia.
Grace WidjajahakimKalbe Genomics Laboratory, Jl. Ahmad Yani No. 2, Pulomas, Jakarta, Indonesia.
Winiarti GaniKalbe Genomics Laboratory, Jl. Ahmad Yani No. 2, Pulomas, Jakarta, Indonesia.
Albert MahanadiHong Kong University of Science and Technology, Hong Kong, Hong Kong.
Jocelyn AgnesUniversity of Melbourne, Parkville, VIC, Australia.
Bela Haifa KhairunisaInstitut Teknologi Bandung, Bandung, Indonesia.
Ahmad R UtomoCancer Diagnostic, Stem-cell and Cancer Institute, Komplek Bintang Toedjoe Pulomas, Jakarta, Indonesia. Ahmad.utomo@kalgenlab.com.
Universitas Achmad Yani · IDBandung Institute of Technology · IDCancer Research Institute of the Slovak Academy of Sciences · SKDharmais Cancer Hospital · IDHong Kong University of Science and Technology · HKThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundK-RAS and recently N-RAS gene mutation testing are mandatory requirements prior to anti-epidermal growth factor receptor (EGFR) monoclonal antibody treatment of metastatic CRC. Mutation prevalence and distribution in Indonesian colorectal cancer (CRC) are not known.

methodsCombined methods of PCR high-resolution melt (HRM), restriction fragment length polymorphism (RFLP), and direct DNA sequencing were used to genotype exons 2, 3, and 4 of both K-RAS and N-RAS genes for routine clinical testing of CRC patients. Descriptive analytical review of 595 consecutive CRC patients (years 2013 to 2016) was performed to find associations between gene mutations and clinicopathologic features.

resultsThis retrospective study revealed overall K-RAS gene mutation in exon 2 (codon 12 and 13) rates being 34.9%. Women (42.5%), stages I and II (43.4%), and well and moderate differentiations (37.7%) had higher frequency of K-RAS exon 2 mutations than men (29%, p = 0.006), stages (III and IV 31.9%, p = 0.05), and poor differentiation (11.8%, p = 0.002), respectively. At later period (2015-2016), 121 of 595 patients were genotyped for the remaining exons 3 and 4 of K-RAS as well as exons 2, 3, and 4 of N-RAS mutations resulting in overall RAS mutation prevalence of 41%. Mucinous histology had highest frequency of N-RAS mutation.

conclusionsCombination of PCR HRM with either RFLP or direct DNA sequencing was useful to detect K-RAS exon 2 and extended RAS mutations, respectively. Frequency of all RAS mutations in stage IV Indonesian (41%) was similar among Asians (41-49%), which tend to be lower than western (55%) CRC.

Indexed as

MutationAdolescentAdultAgedCohort StudiesColorectal NeoplasmsFemaleHumansIndonesiaMaleMiddle AgedProto-Oncogene Proteins p21(ras)Young AdultKRAS protein, humanProto-Oncogene Proteins p21(ras)AsianColorectal cancer mutationHigh-resolution meltingIndonesiaK-RASN-RAS

Identifiers

PMID28044264
OpenAlexW2567237631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.