Evidence map›Paper›PMID 28044043›Full record

ArticleThe American journal of tropical medicine and hygiene2017

Adaptive Diversification Between Yellow Fever Virus West African and South American Lineages: A Genome-Wide Study.

Yan Li, Zexiao Yang

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  2. Article
  3. Human pathogenic RNA viruses establish noncompeting lineages by occupying independent niches.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Re-emergence of yellow fever in the neotropics - quo vadis?Emerging topics in life sciences · 2020
    Review
  5. Review
  6. Review
  7. Yellow fever in Africa and the Americas: a historical and epidemiological perspective.The journal of venomous animals and toxins including tropical diseases · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yan LiCollege of Animal Science and Technology, Sichuan Agricultural University, Wenjiang, People's Republic of China.
Zexiao YangCollege of Veterinary Medicine, Sichuan Agricultural University, Wenjiang, People's Republic of China.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yellow fever virus (YFV) has emerged as the causative agent of a vector-borne disease with devastating mortality in the tropics of Africa and the Americas. YFV phylogenies indicate that the isolates collected from West Africa, East and Central Africa, and South America cluster into different lineages and the virus spread into the Americas from Africa. To determine the nature of genetic variation accompanying the intercontinental epidemic, we performed a genome-wide evolutionary study on the West African and South American lineages of YFV. Our results reveal that adaptive genetic diversification has occurred on viral nonstructural protein 5 (NS5), which is crucially required for viral genome replication, in the early epidemic phase of these currently circulating lineages. Furthermore, major amino acid changes relevant to the adaptive diversification generally cluster in different structural regions of NS5 in a lineage-specific manner. These results suggest that YFV has experienced adaptive diversification in the epidemic spread between the continents and shed insights into the genetic determinants of such diversification, which might be beneficial for understanding the emergence and re-emergence of yellow fever as an important global public health issue.

Indexed as

Evolution, MolecularGenetics, PopulationGenome, ViralAfrica, WesternGenetic VariationHumansPhylogenyProtein ConformationSequence AlignmentSouth AmericaViral Nonstructural ProteinsVirus ReplicationYellow fever virusNS5 protein, flavivirusViral Nonstructural Proteins

Identifiers

PMID28044043
PMCPMC5361553
OpenAlexW2561038062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.