Evidence map›Paper›PMID 28042954›Full record

ArticleOncotarget2017

NDRG4 hypermethylation is a potential biomarker for diagnosis and prognosis of gastric cancer in Chinese population.

Xiaoying Chen, Yong Yang, Jing Liu, Bin Li, Yan Xu, Cong Li, Qi Xu, Guili Liu, Yingmin Chen, Jieer Ying and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

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  15. Characterization of the prognostic values of theTherapeutic advances in gastroenterology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Xiaoying ChenMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Yong YangMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Jing LiuMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Bin LiMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Yan XuMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Cong LiDepartment of Medical Oncology, Zhejiang Cancer Hospital, Hangzhou, Zhejiang 310022, China.
Qi XuDepartment of Medical Oncology, Zhejiang Cancer Hospital, Hangzhou, Zhejiang 310022, China.
Guili LiuMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Yingmin ChenMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Jieer YingDepartment of Medical Oncology, Zhejiang Cancer Hospital, Hangzhou, Zhejiang 310022, China.
Shiwei DuanMedical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
Ningbo University · CNZhejiang Cancer Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to assess whether N-Myc downstream regulated gene 4 (NDRG4) methylation was associated with the diagnosis and prognosis of gastric cancer, we measured the methylation of NDRG4 promoter and gene body regions among 110 gastric cancer patients using quantitative methods (MethyLight and pyrosequencing). Both NDRG4 promoter and gene body methylation levels were increased in tumor tissues than paired adjacent normal tissues (P < 0.001). NDRG4 gene body methylation was found to be significantly associated with age and tumor differentiation. NDRG4 promoter hypermethylation was proved to be a predictor of poor overall survival. However, opposite result was observed among The Cancer Genome Atlas (TCGA) cohort. The findings from gastric cell lines and public databases have suggested that NDRG4 methylation level was inversely associated with NDRG4 transcription level. Subsequent luciferase reporter gene assay showed that promoter CpG island but not gene body CpG island was able to upregulate gene expression. Collectively, NDRG4 promoter hypermethylation contributed to the risk of gastric cancer and predicted a poor prognosis in Chinese gastric cancer patients. Moreover, the combined methylation levels of NDRG4 promoter and gene body served as diagnostic biomarkers in gastric cancer.

Indexed as

DNA MethylationAsian PeopleBiomarkers, TumorCell Line, TumorChinaComputational BiologyCpG IslandsDatabases, GeneticFemaleGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseHumansKaplan-Meier EstimateMaleMiddle AgedMuscle ProteinsBiomarkers, TumorMuscle ProteinsNDRG4 protein, humanNerve Tissue ProteinsdiagnosisDNA methylationgastric cancerN-Myc downstream regulated gene 4prognosis

Identifiers

PMID28042954
PMCPMC5352386
OpenAlexW2562535631

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.