Evidence map›Paper›PMID 28041881›Full record

ArticleNeuron2017

Nipbl Interacts with Zfp609 and the Integrator Complex to Regulate Cortical Neuron Migration.

Debbie L C van den Berg, Roberta Azzarelli, Koji Oishi, Ben Martynoga, Noelia Urbán, Dick H W Dekkers, Jeroen A Demmers, François Guillemot

Open access · hybridAbstract read
In one paragraph

Article in Neuron, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 81 citations in OpenAlex.

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  17. Transcription shapes 3D chromatin organization by interacting with loop extrusion.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Debbie L C van den BergThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK. Electronic address: debbie.vandenberg@crick.ac.uk.
Roberta AzzarelliThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK.
Koji OishiThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK.
Ben MartynogaThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK.
Noelia UrbánThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK.
Dick H W DekkersCenter for Proteomics, Erasmus MC, Wytemaweg 80, 3015 CN Rotterdam, the Netherlands.
Jeroen A DemmersCenter for Proteomics, Erasmus MC, Wytemaweg 80, 3015 CN Rotterdam, the Netherlands.
François GuillemotThe Francis Crick Institute, Mill Hill Laboratory, The Ridgeway, London NW7 1AA, UK. Electronic address: francois.guillemot@crick.ac.uk.
The Francis Crick Institute · GBErasmus MC · NL

Funding

Medical Research Council MR/M023907/1
6 · The paper itself

Abstract

Mutations in NIPBL are the most frequent cause of Cornelia de Lange syndrome (CdLS), a developmental disorder encompassing several neurological defects, including intellectual disability and seizures. How NIPBL mutations affect brain development is not understood. Here we identify Nipbl as a functional interaction partner of the neural transcription factor Zfp609 in brain development. Depletion of Zfp609 or Nipbl from cortical neural progenitors in vivo is detrimental to neuronal migration. Zfp609 and Nipbl overlap at genomic binding sites independently of cohesin and regulate genes that control cortical neuron migration. We find that Zfp609 and Nipbl interact with the Integrator complex, which functions in RNA polymerase 2 pause release. Indeed, Zfp609 and Nipbl co-localize at gene promoters containing paused RNA polymerase 2, and Integrator similarly regulates neuronal migration. Our data provide a rationale and mechanistic insights for the role of Nipbl in the neurological defects associated with CdLS.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell Cycle ProteinsCell MovementCerebral CortexChromosomal Proteins, Non-HistoneCohesinsDe Lange SyndromeMiceNeural Stem CellsNeuronsPromoter Regions, GeneticRNA Polymerase IITrans-ActivatorsTranscription FactorsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsNipbl protein, mouseRNA Polymerase IITrans-ActivatorsTranscription FactorsZfp609 protein, mouseCornelia de Lange syndromeIntegratorneuronal migrationNipblRNA pol2 pausingtranscriptionZfp609

Identifiers

PMID28041881
PMCPMC5263256
OpenAlexW2562651131

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.