Evidence map›Paper›PMID 28040800›Full record

ArticleJournal of experimental botany2017

Identification, introgression, and validation of fruit volatile QTLs from a red-fruited wild tomato species.

José L Rambla, Aurora Medina, Asun Fernández-Del-Carmen, Walter Barrantes, Silvana Grandillo, Maria Cammareri, Gloria López-Casado, Guillermo Rodrigo, Arancha Alonso, Santiago García-Martínez and 5 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  10. In-Depth Characterization ofFrontiers in plant science · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Natural Genetic Diversity in Tomato Flavor Genes.Frontiers in plant science · 2021
    Article
  18. Dissection of complex traits of tomato in the post-genome era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

José L RamblaCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Aurora MedinaCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Asun Fernández-Del-CarmenCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Walter BarrantesCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Silvana GrandilloNational Research Council of Italy, Institute of Biosciences and Bioresources (CNR-IBBR), Research Division Portici, Via Università 133, Portici (Naples), Italy.
Maria CammareriNational Research Council of Italy, Institute of Biosciences and Bioresources (CNR-IBBR), Research Division Portici, Via Università 133, Portici (Naples), Italy.
Gloria López-CasadoCSIC-Universidad de Málaga, Instituto de Hortofruticultura Subtropical y Mediterránea, Algarrobo Costa, Málaga, Spain.
Guillermo RodrigoCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Arancha AlonsoDepartamento de Biología Aplicada, EPSO-UMH. Ctra, Beniel Km 3,2, Orihuela, Alicante, Spain.
Santiago García-MartínezDepartamento de Biología Aplicada, EPSO-UMH. Ctra, Beniel Km 3,2, Orihuela, Alicante, Spain.
Jaime PrimoUniversidad Politécnica de Valencia, Centro de Ecología Química Agrícola, Instituto Agroforestal Mediterráneo, Valencia, Spain.
Juan J RuizDepartamento de Biología Aplicada, EPSO-UMH. Ctra, Beniel Km 3,2, Orihuela, Alicante, Spain.
Rafael Fernández-MuñozCSIC-Universidad de Málaga, Instituto de Hortofruticultura Subtropical y Mediterránea, Algarrobo Costa, Málaga, Spain.
Antonio J MonforteCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.
Antonio GranellCSIC-Universidad Politécnica de Valencia, Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Volatile organic compounds (VOCs) are major determinants of fruit flavor, a primary objective in tomato breeding. A recombinant inbred line (RIL) population consisting of 169 lines derived from a cross between Solanum lycopersicum and a red-fruited wild tomato species Solanum pimpinellifolium accession (SP) was characterized for VOCs in three different seasons. Correlation and hierarchical cluster analyses were performed on the 52 VOCs identified, providing a tool for the putative assignation of individual compounds to metabolic pathways. Quantitative trait locus (QTL) analysis, based on a genetic linkage map comprising 297 single nucleotide polymorphisms (SNPs), revealed 102 QTLs (75% not described previously) corresponding to 39 different VOCs. The SP alleles exerted a positive effect on most of the underlying apocarotenoid volatile QTLs-regarded as desirable for liking tomato-indicating that alleles inherited from SP are a valuable resource for flavor breeding. An introgression line (IL) population developed from the same parental genotypes provided 12 ILs carrying a single SP introgression and covering 85 VOC QTLs, which were characterized at three locations. The results showed that almost half of the QTLs previously identified in the RILs maintained their effect in an IL form, reinforcing the value of these QTLs for flavor/aroma breeding in cultivated tomato.

Indexed as

Genes, PlantQuantitative Trait LociFruitHybridization, GeneticSolanumVolatile Organic CompoundsVolatile Organic CompoundsFruit flavorintrogression lines (ILs)quantitative trait loci (QTLs)recombinant inbred lines (RILs)Solanum habrochaitesSolanum pimpinellifoliumSolCap tomato SNP arraytomatovolatiles

Identifiers

PMID28040800
PMCPMC5444475

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.