Evidence map›Paper›PMID 28040774›Full record

ArticleGenome biology and evolution2016

Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.

Eva-Maria Niehaus, Martin Münsterkötter, Robert H Proctor, Daren W Brown, Amir Sharon, Yifat Idan, Liat Oren-Young, Christian M Sieber, Ondřej Novák, Aleš Pěnčík and 16 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 158 citations in OpenAlex.

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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 7 countries.

Eva-Maria NiehausInstitut für Biologie und Biotechnologie der Pflanzen, Molecular Biology and Biotechnology of Fungi, Westfälische Wilhelms-Universität Münster, Münster, Germany.
Martin MünsterkötterInstitute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Robert H ProctorUnited States Department of Agriculture, National Center for Agricultural Utilization Research, Peoria, Illinois.
Daren W BrownUnited States Department of Agriculture, National Center for Agricultural Utilization Research, Peoria, Illinois.
Amir SharonDepartment of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv, Israel.
Yifat IdanDepartment of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv, Israel.
Liat Oren-YoungDepartment of Molecular Biology and Ecology of Plants, Tel Aviv University, Tel Aviv, Israel.
Christian M SieberDepartment of Energy Joint Genome Institute, University of California, Walnut Creek, Berkeley, California.
Ondřej NovákCentre of the Region Hana for Biotechnological and Agricultural Research, Palacky University, Olomouc, Czech Republic.
Aleš PěnčíkCentre of the Region Hana for Biotechnological and Agricultural Research, Palacky University, Olomouc, Czech Republic.
Danuše TarkowskáCentre of the Region Hana for Biotechnological and Agricultural Research, Palacky University, Olomouc, Czech Republic.
Kristýna HromadováCentre of the Region Hana for Biotechnological and Agricultural Research, Palacky University, Olomouc, Czech Republic.
Stanley FreemanDepartment of Plant Pathology and Weed Research, Agricultural Research Organization (ARO), The Volcani Center, Bet-Dagan, Israel.
Marcel MaymonDepartment of Plant Pathology and Weed Research, Agricultural Research Organization (ARO), The Volcani Center, Bet-Dagan, Israel.
Meirav ElazarDepartment of Plant Pathology and Weed Research, Agricultural Research Organization (ARO), The Volcani Center, Bet-Dagan, Israel.
Sahar A YoussefPlant Pathology Research Institute, Agricultural Research Center, Giza, Egypt.
El Said M El-ShabrawyPlant Pathology Research Institute, Agricultural Research Center, Giza, Egypt.
Abdel Baset A ShalabyPlant Pathology Research Institute, Agricultural Research Center, Giza, Egypt.
Petra HoutermanUniversity of Amsterdam, Swammerdam Institute for Life Sciences, Plant Pathology, Amsterdam, The Netherlands.
Nelson L BrockRheinische Friedrich-Wilhelms-Universität Bonn, Kekulé-Institut für Organische Chemie und Biochemie, Germany.
Immo BurkhardtRheinische Friedrich-Wilhelms-Universität Bonn, Kekulé-Institut für Organische Chemie und Biochemie, Germany.
Elena A TsavkelovaDepartment of Microbiology Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
Jeroen S DickschatRheinische Friedrich-Wilhelms-Universität Bonn, Kekulé-Institut für Organische Chemie und Biochemie, Germany.
Petr GaluszkaCentre of the Region Hana for Biotechnological and Agricultural Research, Palacky University, Olomouc, Czech Republic.
Ulrich GüldenerDepartment of Genome-oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, Maximus-von-Imhof-Forum 3, Freising, Germany tudzynsb@uni-muenster.de u.gueldener@tum.de.
Bettina TudzynskiInstitut für Biologie und Biotechnologie der Pflanzen, Molecular Biology and Biotechnology of Fungi, Westfälische Wilhelms-Universität Münster, Münster, Germany tudzynsb@uni-muenster.de u.gueldener@tum.de.
Palacký University Olomouc · CZAgricultural Research Center · EGAgricultural Research Organization · ILTel Aviv University · ILUniversity of Bonn · DENational Center for Agricultural Utilization Research · USUniversity of Münster · DEInstitute of Bioinformatics and Systems Biology · DEJoint Genome Institute · USLomonosov Moscow State University · RUTechnical University of Munich · DEUniversity of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Species of the Fusarium fujikuroi species complex (FFC) cause a wide spectrum of often devastating diseases on diverse agricultural crops, including coffee, fig, mango, maize, rice, and sugarcane. Although species within the FFC are difficult to distinguish by morphology, and their genes often share 90% sequence similarity, they can differ in host plant specificity and life style. FFC species can also produce structurally diverse secondary metabolites (SMs), including the mycotoxins fumonisins, fusarins, fusaric acid, and beauvericin, and the phytohormones gibberellins, auxins, and cytokinins. The spectrum of SMs produced can differ among closely related species, suggesting that SMs might be determinants of host specificity. To date, genomes of only a limited number of FFC species have been sequenced. Here, we provide draft genome sequences of three more members of the FFC: a single isolate of F. mangiferae, the cause of mango malformation, and two isolates of F. proliferatum, one a pathogen of maize and the other an orchid endophyte. We compared these genomes to publicly available genome sequences of three other FFC species. The comparisons revealed species-specific and isolate-specific differences in the composition and expression (in vitro and in planta) of genes involved in SM production including those for phytohormome biosynthesis. Such differences have the potential to impact host specificity and, as in the case of F. proliferatum, the pathogenic versus endophytic life style.

Indexed as

Genome, FungalPolymorphism, GeneticEvolution, MolecularFungal ProteinsFusariumHost SpecificityMangiferaMetabolomeOrchidaceaeZea maysFungal ProteinsevolutionFusarium fujikuroi species complexgenome sequencingin planta expressionmetabolomicssecondary metabolism

Identifiers

PMID28040774
PMCPMC5203792
OpenAlexW2566749513

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.