Evidence map›Paper›PMID 28039632›Full record

ArticleEnvironmental science and pollution research international2017

Development of a PCR-free DNA-based assay for the specific detection of Vibrio species in environmental samples by targeting the 16S rRNA.

E Da-Silva, L Barthelmebs, J Baudart

Abstract read
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In one paragraph

Article in Environmental science and pollution research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

E Da-SilvaBiocapteurs Analyses Environment, Université Perpignan, Via Domitia, 66860, Perpignan, France.
L BarthelmebsBiocapteurs Analyses Environment, Université Perpignan, Via Domitia, 66860, Perpignan, France. barthelm@univ-perp.fr.ORCID http://orcid.org/0000-0002-1961-0701
J BaudartCNRS, Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM), Observatoire Océanologique, Sorbonne Universités, UPMC Univ. Paris 06, F-66650, Banyuls/Mer, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel PCR-free DNA-based assay was developed for the detection of Vibrio spp. A sandwich hybridization format using an immobilized capture probe and a labeled signal probe was selected and combined with chemiluminescent method for the detection of the RNA target. In a first step, probes were validated using positive controls (PCs). A linearity was observed between 0.1 and 2.5 nM of PC, and detection limit was determined as 0.1 nM. In a second step, specificity was checked by using RNA extracted from a panel of 31 environmental bacterial strains. Detection limit of 5 ng μL

Indexed as

DNA, ViralRNA, Ribosomal, 16SDNA, BacterialEnvironmental MonitoringLimit of DetectionNucleic Acid HybridizationSensitivity and SpecificitySequence Analysis, DNAVibrioDNA, BacterialDNA, ViralRNA, Ribosomal, 16SChemiluminescenceDNA-based assayEnvironmental analysisPCR-freeSandwich hybridization assayVibrio detection

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.