Evidence map›Paper›PMID 28039384›Full record

ArticleMolecular biology and evolution2017

An Intact Retroviral Gene Conserved in Spiny-Rayed Fishes for over 100 My.

Jamie E Henzy, Robert J Gifford, Christopher P Kenaley, Welkin E Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  11. Embryonic specializations for vertebrate placentation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  12. Article
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  17. Convergent Co-option of the RetroviralJournal of virology · 2019
    Article
  18. Review
  19. Article
  20. An endogenous retroviral envelope syncytin and its cognate receptor identified in the viviparous placentalProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jamie E HenzyBiology Department, Boston College, Chestnut Hill, MA.
Robert J GiffordMRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.
Christopher P KenaleyBiology Department, Boston College, Chestnut Hill, MA.
Welkin E JohnsonBiology Department, Boston College, Chestnut Hill, MA.
Boston College · USMRC University of Glasgow Centre for Virus Research · GB

Funding

Cross-Species transmission and adaptation of primate lentivirusesR01AI083118 · NIAID · HARVARD MEDICAL SCHOOL · PI JOHNSON, WELKIN E · 2009 to 2019
$4.0M
Medical Research Council MC_UU_12014/12NIAID NIH HHS R01 AI083118
6 · The paper itself

Abstract

We have identified a retroviral envelope gene with a complete, intact open reading frame (ORF) in 20 species of spiny-rayed fishes (Acanthomorpha). The taxonomic distribution of the gene, "percomORF", indicates insertion into the ancestral lineage >110 Ma, making it the oldest known conserved gene of viral origin in a vertebrate genome. Underscoring its ancient provenence, percomORF exists as an isolated ORF within the intron of a widely conserved host gene, with no discernible proviral sequence nearby. Despite its remarkable age, percomORF retains canonical features of a retroviral glycoprotein, and tests for selection strongly suggest cooption for a host function. Retroviral envelope genes have been coopted for a role in placentogenesis by numerous lineages of mammals, including eutherians and marsupials, representing a variety of placental structures. Therefore percomORF's presence within the group Percomorpha-unique among spiny-finned fishes in having evolved placentation and live birth-is especially intriguing.

Indexed as

AnimalsBiological EvolutionConserved SequenceEndogenous RetrovirusesEvolution, MolecularFishesGene Products, envOpen Reading FramesPhylogenyProvirusesRetroviridae ProteinsSequence Analysis, DNAViral Envelope ProteinsGene Products, envRetroviridae ProteinsViral Envelope Proteinsendogenous retrovirusevolution.viral gene cooption

Identifiers

PMID28039384
PMCPMC5939848
OpenAlexW2563727729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.