Evidence map›Paper›PMID 28036400›Full record

ArticlePloS one2016

Agrobacterium tumefaciens estC, Encoding an Enzyme Containing Esterase Activity, Is Regulated by EstR, a Regulator in the MarR Family.

Surawach Rittiroongrad, Nisanart Charoenlap, Suparat Giengkam, Paiboon Vattanaviboon, Skorn Mongkolsuk

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Surawach RittiroongradLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Nisanart CharoenlapLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Suparat GiengkamLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Paiboon VattanaviboonLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Skorn MongkolsukLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.ORCID http://orcid.org/0000-0001-9698-0004
Chulabhorn Research Institute · THMahidol University · THChulabhorn Graduate Institute · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of the A. tumefaciens genome revealed estC, which encodes an esterase located next to its transcriptional regulator estR, a regulator of esterase in the MarR family. Inactivation of estC results in a small increase in the resistance to organic hydroperoxides, whereas a high level of expression of estC from an expression vector leads to a reduction in the resistance to organic hydroperoxides and menadione. The estC gene is transcribed divergently from its regulator, estR. Expression analysis showed that only high concentrations of cumene hydroperoxide (CHP, 1 mM) induced expression of both genes in an EstR-dependent manner. The EstR protein acts as a CHP sensor and a transcriptional repressor of both genes. EstR specifically binds to the operator sites OI and OII overlapping the promoter elements of estC and estR. This binding is responsible for transcription repression of both genes. Exposure to organic hydroperoxide results in oxidation of the sensing cysteine (Cys16) residue of EstR, leading to a release of the oxidized repressor from the operator sites, thereby allowing transcription and high levels of expression of both genes. The estC is the first organic hydroperoxide-inducible esterase-encoding gene in alphaproteobacteria.

Indexed as

Agrobacterium tumefaciensAmino Acid SequenceBacterial ProteinsEsterasesGene Expression Regulation, BacterialHydrogen PeroxideOxidation-ReductionPromoter Regions, GeneticRepressor ProteinsSequence AlignmentTranscription FactorsBacterial ProteinsEsterasesHydrogen PeroxideRepressor ProteinsTranscription Factors

Identifiers

PMID28036400
PMCPMC5201249
OpenAlexW2568305437

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.