Evidence map›Paper›PMID 28034673›Full record

ArticleExperimental cell research2017

High-content image informatics of the structural nuclear protein NuMA parses trajectories for stem/progenitor cell lineages and oncogenic transformation.

Sebastián L Vega, Er Liu, Varun Arvind, Jared Bushman, Hak-Joon Sung, Matthew L Becker, Sophie Lelièvre, Joachim Kohn, Pierre-Alexandre Vidi, Prabhas V Moghe

Abstract read
In one paragraph

Article in Experimental cell research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Architecture in 3D cell culture: An essential feature for in vitro toxicology.Toxicology in vitro : an international journal published in association with BIBRA · 2017
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sebastián L VegaDepartment of Chemical and Biochemical Engineering, Rutgers University, Piscataway, NJ, United States.
Er LiuDepartment of Biomedical Engineering, Rutgers University, Piscataway, NJ, United States.
Varun ArvindDepartment of Biomedical Engineering, Rutgers University, Piscataway, NJ, United States.
Jared BushmanDepartment of Chemistry and Chemical Biology, New Jersey Center for Biomaterials, Piscataway, NJ, United States; School of Pharmacy, University of Wyoming, Laramie, WY, United States.
Hak-Joon SungDepartment of Chemistry and Chemical Biology, New Jersey Center for Biomaterials, Piscataway, NJ, United States; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, United States.
Matthew L BeckerDepartment of Polymer Science and Engineering, University of Akron, Akron, OH, United States.
Sophie LelièvreDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN, United States.
Joachim KohnDepartment of Chemistry and Chemical Biology, New Jersey Center for Biomaterials, Piscataway, NJ, United States.
Pierre-Alexandre VidiDepartment of Cancer Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States. Electronic address: pvidi@wakehealth.edu.
Prabhas V MogheDepartment of Chemical and Biochemical Engineering, Rutgers University, Piscataway, NJ, United States; Department of Biomedical Engineering, Rutgers University, Piscataway, NJ, United States. Electronic address: moghe@rutgers.edu.

Funding

MOUNT SINAI MEDICAL SCIENTIST TRAINING PROGRAMT32GM007280 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BARON, MARGARET H · 1985 to 2021
$22.8M
RESBIO - the Technology Resource for Polymeric BiomaterialsP41EB001046 · NIBIB · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KOHN, JOACHIM B. · 2003 to 2017
$17.0M
NuMA function in nonmalignant and malignant breast cellsR01CA112017 · NCI · PURDUE UNIVERSITY · PI LELIEVRE, SOPHIE A. · 2007 to 2012
$872k
Interplay Between Tissue Architecture and Nuclear Organization in the DNA DamageR00CA163957 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI VIDI, PIERRE-ALEXANDRE · 2015 to 2017
$747k
NCI NIH HHS R00 CA163957NCI NIH HHS R01 CA112017NIBIB NIH HHS P41 EB001046NIGMS NIH HHS T32 GM007280
6 · The paper itself

Abstract

Stem and progenitor cells that exhibit significant regenerative potential and critical roles in cancer initiation and progression remain difficult to characterize. Cell fates are determined by reciprocal signaling between the cell microenvironment and the nucleus; hence parameters derived from nuclear remodeling are ideal candidates for stem/progenitor cell characterization. Here we applied high-content, single cell analysis of nuclear shape and organization to examine stem and progenitor cells destined to distinct differentiation endpoints, yet undistinguishable by conventional methods. Nuclear descriptors defined through image informatics classified mesenchymal stem cells poised to either adipogenic or osteogenic differentiation, and oligodendrocyte precursors isolated from different regions of the brain and destined to distinct astrocyte subtypes. Nuclear descriptors also revealed early changes in stem cells after chemical oncogenesis, allowing the identification of a class of cancer-mitigating biomaterials. To capture the metrology of nuclear changes, we developed a simple and quantitative "imaging-derived" parsing index, which reflects the dynamic evolution of the high-dimensional space of nuclear organizational features. A comparative analysis of parsing outcomes via either nuclear shape or textural metrics of the nuclear structural protein NuMA indicates the nuclear shape alone is a weak phenotypic predictor. In contrast, variations in the NuMA organization parsed emergent cell phenotypes and discerned emergent stages of stem cell transformation, supporting a prognosticating role for this protein in the outcomes of nuclear functions.

Indexed as

Cell Transformation, NeoplasticAdipocytesAntigens, NuclearCell Cycle ProteinsCell DifferentiationCell LineCell NucleusCells, CulturedCell SeparationHumansMesenchymal Stem CellsNuclear Matrix-Associated ProteinsOsteocytesSingle-Cell AnalysisAntigens, NuclearCell Cycle ProteinsNuclear Matrix-Associated ProteinsNUMA1 protein, humanBiomaterialsDifferentiationImage informaticsImagingMesenchymal stem cellsNuclearOncogenic transformationOrganizationStem cells

Identifiers

PMID28034673
PMCPMC5303152

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.