Evidence map›Paper›PMID 28033345›Full record

ArticlePloS one2016

Determination of Characteristics of Erythromycin Resistant Streptococcus pneumoniae with Preferred PCV Usage in Iran.

Malihe Talebi, Azadeh Azadegan, Javad Sadeghi, Ali Ahmadi, Mostafa Ghanei, Mohammad Katouli, Parviz Owlia, Mohammad R Pourshafie

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Molecular Characterization Based on Whole-Genome Sequencing ofFrontiers in cellular and infection microbiology · 2021
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  11. Is Penicillin-NonsusceptibleScientifica · 2021
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  12. Article
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  14. Molecular Detection and Serotyping ofIranian journal of medical sciences · 2020
    Article
  15. Serotype Distribution and Antibiotic Susceptibility ofInfection and drug resistance · 2020
    Article
  16. Article
  17. Resistance ofTanaffos · 2019
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Malihe TalebiDepartment of Microbiology, School of Medicine, Iran University of Medical Sciences, Tehran, Iran.
Azadeh AzadeganDepartment of Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Javad SadeghiDepartment of Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Ali AhmadiDepartment of Microbiology, School of Medicine, Iran University of Medical Sciences, Tehran, Iran.
Mostafa GhaneiTuberculosis Department, Pasteur Institute of Iran, Tehran, Iran.
Mohammad KatouliGenecology Research Centre, Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Maroochydore, Queensland, Australia.
Parviz OwliaMolecular Microbiology Research Center (MMRC), Shahed University, Tehran, Iran.
Mohammad R PourshafieDepartment of Microbiology, Pasteur Institute of Iran, Tehran, Iran.ORCID http://orcid.org/0000-0002-6226-7064
Iran University of Medical Sciences · IRPasteur Institute of Iran · IRTehran University of Medical Sciences · IRShahed University · IRUniversity of the Sunshine Coast · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amongst 100 Streptococcus pneumoniae isolated from clinical cases and nasopharynx of healthy individuals, 60 erythromycin resistant strains were isolated and characterized using MLST, PFGE, transposon analysis and Quellung reaction. Most of the S. pneumoniae erythromycin resistant (80%) were found to be attributable to the ermB-edncoded ribosome methylase activity which differs from the dominant mechanism of macrolide resistance seen in North America. The most predominant transposons were; Tn1545/6003 (27%), Tn6002 (22%), Tn2009 (20%), Tn2010 (17%). Number of the clinical isolates carrying Tn2010 was more significant than the normal flora. The serotypes found were; 14 (33%), 3 (22%), 23F (15%), 19F (15%), 19A (7%), 6A (3%), 9V (3%) and 6B (2%). The most prevalent serotypes among the clinical (n = 28) and normal flora (n = 32) isolates were serotypes 14 (46%) and 3 (31%), respectively. The most prevalent vaccine serotypes amongst the clinical isolates and the healthy individuals were pneumococcal conjugate vaccines (PCV) 13 and PCV10, respectively. PFGE revealed 34 pulsotypes with 9 common and 25 single types. Significant number of the normal isolates belonged to CT5 and CT6. On the other hand, significant number of clinical isolates belonged to CT8 as compared to the normal flora isolates. MLST showed 2 dominant sequence types. ST3130 (23%) and ST180 (22%) were the most predominant sequence types in the clinical and normal isolates, respectively. There was no significant difference in other sequence types between clinical and normal flora isolates. Three polyclonal complexes including Sweden15A -25, Spain23F-1 and Spain9V-3 constituted 58% of the isolates. Our results suggest that the genetic diversity and transposon distribution were high among S. pneumoniae, particularly in the isolates containing erm(B) and double antibiotic resistant genes (erm/mef). The results presented here could influence the change in the current vaccination practices in Iran which currently calls for vaccination with PCV7 or PCV10.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDNA Transposable ElementsDrug Resistance, Multiple, BacterialErythromycinHumansIranMembrane ProteinsMeningitis, PneumococcalMethyltransferasesMicrobial Sensitivity TestsMultilocus Sequence TypingPneumococcal VaccinesPneumonia, PneumococcalSerogroupSerotypingAnti-Bacterial AgentsBacterial ProteinsDNA Transposable ElementsErythromycinMefA protein, StreptococcusMembrane ProteinsMethyltransferasesPneumococcal VaccinesrRNA (adenosine-O-2'-)methyltransferase

Identifiers

PMID28033345
PMCPMC5199012
OpenAlexW2563900244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.