Evidence map›Paper›PMID 28031482›Full record

ArticleRNA (New York, N.Y.)2017

Involvement of fission yeast Pdc2 in RNA degradation and P-body function.

Chun-Yu Wang, Yi-Ting Wang, Wan-Yi Hsiao, Shao-Win Wang

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Pat1 activates late steps in mRNA decay by multiple mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chun-Yu WangInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli County 350, Taiwan, Republic of China.
Yi-Ting WangInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli County 350, Taiwan, Republic of China.
Wan-Yi HsiaoInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli County 350, Taiwan, Republic of China.
Shao-Win WangInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli County 350, Taiwan, Republic of China.
National Health Research Institutes · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study we identified Pdc2, the fission yeast ortholog of human Pat1b protein, which forms a complex with Lsm1-7 and plays a role in coupling deadenylation and decapping. The involvement of Pdc2 in RNA degradation and P-body function was also determined. We found that Pdc2 interacts with Dcp2 and is required for decapping in vivo. Although not absolutely essential for P-body assembly, overexpression of Pdc2 enhanced P-body formation even in the absence of Pdc1, the fission yeast functional homolog of human Edc4 protein, indicating that Pdc2 also plays a role in P-body formation. Intriguingly, in the absence of Pdc2, Lsm1 was found to accumulate in the nucleus, suggesting that Pdc2 shuttling between nucleus and cytoplasm plays a role in decreasing the nuclear concentration of Lsm1 to increase Lsm1 in the cytoplasm. Furthermore, unlike other components of P-bodies, the deadenylase Ccr4 did not accumulate in P-bodies in cells growing under favorable conditions and was only recruited to P-bodies after deprivation of glucose in a Pdc2-Lsm1-dependent manner, indicating a function of Pdc2 in cellular response to environmental stress. In supporting this idea,

Indexed as

Gene Expression Regulation, FungalRNA StabilityActive Transport, Cell NucleusBase SequenceCell CycleCell NucleusCytoplasmDNA-Binding ProteinsExoribonucleasesFungal ProteinsGlucoseHumansProtein Serine-Threonine KinasesPyruvate DecarboxylaseRNA-Binding ProteinsRNA Cap-Binding ProteinsCcr4 protein, S pombeDcp2 protein, S pombedhp1 protein, S pombeDNA-Binding ProteinsExoribonucleasesFungal ProteinsGlucosePATL1 protein, humanProtein Serine-Threonine KinasesPyruvate Decarboxylaseran1 protein, S pombeRNA-Binding ProteinsRNA Cap-Binding ProteinsRNA, FungalSchizosaccharomyces pombe ProteinsTranscription Factorsdecappingfission yeastP-bodies

Identifiers

PMID28031482
PMCPMC5340913
OpenAlexW2563743843

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.