ArticleBioinformatics (Oxford, England)2017
dAPE: a web server to detect homorepeats and follow their evolution.
Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species.Journal of evolutionary biology · 2023Review
- The sequence context in poly-alanine regions: structure, function and conservation.Bioinformatics (Oxford, England) · 2022Article
- Article
- Regions with two amino acids in protein sequences: A step forward from homorepeats into the low complexity landscape.Computational and structural biotechnology journal · 2022Article
- Between Interactions and Aggregates: The PolyQ Balance.Genome biology and evolution · 2021Article
- Article
- Disentangling the complexity of low complexity proteins.Briefings in bioinformatics · 2020Review
- Article
- Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.Nucleic acids research · 2019Review
- Glutamine Codon Usage and polyQ Evolution in Primates Depend on the Q Stretch Length.Genome biology and evolution · 2018Article
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Authors and funding
2 authors.
Funding
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Abstract
Summary: Homorepeats are low complexity regions consisting of repetitions of a single amino acid residue. There is no current consensus on the minimum number of residues needed to define a functional homorepeat, nor even if mismatches are allowed. Here we present dAPE, a web server that helps following the evolution of homorepeats based on orthology information, using a sensitive but tunable cutoff to help in the identification of emerging homorepeats. Availability and Implementation: dAPE can be accessed from http://cbdm-01.zdv.uni-mainz.de/∼munoz/polyx . Contact: munoz@uni-mainz.de. Supplementary information: Supplementary data are available at Bioinformatics online.
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Registered trials
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