ArticlePlant biotechnology journal2017
QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.).
Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.
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100 citing papers in PubMed.
- Advances in mutant characterization for detecting causal mutations in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- QTL mapping reveals a wild-derived segment controlling plant architecture in peanut (Arachis hypogaea L.) using a cultivar-wild hybrid population.BMC plant biology · 2026Article
- Genetic basis of pedicellate spikelet masculinization in maize revealed by an advanced maize-teosinte population.Planta · 2026Article
- QTL-Seq Identifies Extra QTLs and Candidate Genes Controlling High Haploid Induction Rate in Maize.Plants (Basel, Switzerland) · 2026Article
- Reverse BSA-QTLseq: A new genotype-driven bioinformatics approach for simultaneous trait mapping.Plant communications · 2026Article
- OsnTNB.11 Encodes a CC-NBS-LRR Type Resistance Protein that Positively Regulates Resistance to Rice Kernel Smut by Modulating the Ethylene Signalling.Rice (New York, N.Y.) · 2025Article
- Identification and validation of QTLs associated with resistance to tomato leaf curl Bangalore virus disease using QTL-seq analysis in tomato (Solanum spp.).Molecular biology reports · 2025Article
- Mapping of a Novel Quantitative Trait Locus Conferring Bacterial Blight Resistance in the Indigenous Upland Rice Variety ULR207 Using the QTL-Seq Approach.Plants (Basel, Switzerland) · 2025Article
- Identification of Genomic Regions Associated with Peanut Rust Resistance by Genome-Wide Association Studies.Plants (Basel, Switzerland) · 2025Article
- Identification of a Major QTL for Seed Protein Content in Cultivated Peanut (Plants (Basel, Switzerland) · 2024Article
- Identification and application of a candidate gene AhAftr1 for aflatoxin production resistance in peanut seed (Arachis hypogaea L.).Journal of advanced research · 2024Article
- Fine mapping and identification of a Fusarium wilt resistance gene FwS1 in pea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society.Plant biotechnology journal · 2024Article
- Validation and identification of promising gene specific markers governing foliar disease resistance in groundnut (Arachis hypogaea L.).Molecular biology reports · 2024Article
- High-throughput diagnostic markers for foliar fungal disease resistance and high oleic acid content in groundnut.BMC plant biology · 2024Article
- High-density bin-based genetic map reveals a 530-kb chromosome segment derived from wild peanut contributing to late leaf spot resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Designing future peanut: the power of genomics-assisted breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Genome-wide SNP discovery and genotyping delineates potential QTLs underlying major yield-attributing traits in buckwheat.The plant genome · 2024Article
- Detection of two homologous major QTLs and development of diagnostic molecular markers for sucrose content in peanut.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Delineation of genes for a major QTL governing heat stress tolerance in chickpea.Plant molecular biology · 2024Article
40 more citing papers are in PubMed but not listed here.
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12 authors.
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Abstract
Rust and late leaf spot (LLS) are the two major foliar fungal diseases in groundnut, and their co-occurrence leads to significant yield loss in addition to the deterioration of fodder quality. To identify candidate genomic regions controlling resistance to rust and LLS, whole-genome resequencing (WGRS)-based approach referred as 'QTL-seq' was deployed. A total of 231.67 Gb raw and 192.10 Gb of clean sequence data were generated through WGRS of resistant parent and the resistant and susceptible bulks for rust and LLS. Sequence analysis of bulks for rust and LLS with reference-guided resistant parent assembly identified 3136 single-nucleotide polymorphisms (SNPs) for rust and 66 SNPs for LLS with the read depth of ≥7 in the identified genomic region on pseudomolecule A03. Detailed analysis identified 30 nonsynonymous SNPs affecting 25 candidate genes for rust resistance, while 14 intronic and three synonymous SNPs affecting nine candidate genes for LLS resistance. Subsequently, allele-specific diagnostic markers were identified for three SNPs for rust resistance and one SNP for LLS resistance. Genotyping of one RIL population (TAG 24 × GPBD 4) with these four diagnostic markers revealed higher phenotypic variation for these two diseases. These results suggest usefulness of QTL-seq approach in precise and rapid identification of candidate genomic regions and development of diagnostic markers for breeding applications.
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