Evidence map›Paper›PMID 28028038›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2017

Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.

Koji Yano, Seishiro Aoki, Meng Liu, Yosuke Umehara, Norio Suganuma, Wataru Iwasaki, Shusei Sato, Takashi Soyano, Hiroshi Kouchi, Masayoshi Kawaguchi

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
13.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Auxin methylation byProceedings of the National Academy of Sciences of the United States of America · 2022
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  6. Review
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  12. PeerJ · 2019
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  14. Review
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  16. DistinctFrontiers in plant science · 2018
    Article
  17. Article
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  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Koji YanoNational Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
Seishiro AokiDepartment of General Systems Studies, Graduate School of Arts and Sciences, the University of Tokyo, Meguro-ku, Tokyo 153-8902, Japan.
Meng LiuDivision of Symbiotic Systems, National Institute for Basic Biology, National Institute for Natural Sciences, Okazaki 444-8585, Japan.
Yosuke UmeharaNational Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
Norio SuganumaDepartment of Life Science, Aichi University of Education, Kariya, Aichi 448-8542, Japan.
Wataru IwasakiDepartment of Biological Sciences, Graduate School of Science, the University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan.
Shusei SatoKazusa DNA Research Institute, Kisarazu, Chiba 292-0812, Japan.
Takashi SoyanoDivision of Symbiotic Systems, National Institute for Basic Biology, National Institute for Natural Sciences, Okazaki 444-8585, Japan.
Hiroshi KouchiNational Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
Masayoshi KawaguchiDivision of Symbiotic Systems, National Institute for Basic Biology, National Institute for Natural Sciences, Okazaki 444-8585, Japan.
Institute of Agrobiological Sciences · JPNational Institute for Basic Biology · JPThe University of Tokyo · JPAichi University of Education · JPKazusa DNA Research Institute · JPThe Graduate University for Advanced Studies, SOKENDAI · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Legume-rhizobium symbiosis is achieved by two major events evolutionarily acquired: root hair infection and organogenesis. Infection thread (IT) development is a distinct element for rhizobial infection. Through ITs, rhizobia are efficiently transported from infection foci on root hairs to dividing meristematic cortical cells. To unveil this process, we performed genetic screening using Lotus japonicus MG-20 and isolated symbiotic mutant lines affecting nodulation, root hair morphology, and IT development. Map-based cloning identified an AP2/ERF transcription factor gene orthologous to Medicago truncatula ERN1. LjERN1 was activated in response to rhizobial infection and depended on CYCLOPS and NSP2. Legumes conserve an ERN1 homolog, ERN2, that functions redundantly with ERN1 in M. truncatula. Phylogenetic analysis showed that the lineages of ERN1 and ERN2 genes originated from a gene duplication event in the common ancestor of legume plants. However, genomic analysis suggested the lack of ERN2 gene in the L. japonicus genome, consistent with Ljern1 mutants exhibited a root hair phenotype that is observed in ern1/ern2 double mutants in M. truncatula. Molecular evolutionary analysis suggested that the nonsynonymous/synonymous rate ratios of legume ERN1 genes was almost identical to that of non-legume plants, whereas the ERN2 genes experienced a relaxed selective constraint.

Indexed as

Evolution, MolecularGene Expression Regulation, PlantLotusPhylogenyPlant ProteinsPlant RootsTranscription FactorsPlant ProteinsTranscription FactorsERN1infection thread developmentLotus japonicusmolecular evolutionary analysis

Identifiers

PMID28028038
PMCPMC5397602
OpenAlexW2561138501

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.