Evidence map›Paper›PMID 28027315›Full record

ArticlePLoS pathogens2016

Non-human Primate Schlafen11 Inhibits Production of Both Host and Viral Proteins.

Alex C Stabell, John Hawkins, Manqing Li, Xia Gao, Michael David, William H Press, Sara L Sawyer

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
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  8. Review
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  12. Article
  13. Mechanistic understanding of human SLFN11.Nature communications · 2022
    Article
  14. Review
  15. Human cytomegalovirus protein RL1 degrades the antiviral factor SLFN11 via recruitment of the CRL4 E3 ubiquitin ligase complex.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alex C StabellBioFrontiers Institute, University of Colorado Boulder, Boulder, CO, United States of America.
John HawkinsInstitute for Computational Engineering and Sciences, University of Texas at Austin, TX, United States of America.
Manqing LiDivision of Biological Sciences, UCSD Moores Cancer Center, University of California San Diego, La Jolla, CA, United States of America.
Xia GaoDivision of Biological Sciences, UCSD Moores Cancer Center, University of California San Diego, La Jolla, CA, United States of America.
Michael DavidDivision of Biological Sciences, UCSD Moores Cancer Center, University of California San Diego, La Jolla, CA, United States of America.
William H PressInstitute for Computational Engineering and Sciences, University of Texas at Austin, TX, United States of America.
Sara L SawyerBioFrontiers Institute, University of Colorado Boulder, Boulder, CO, United States of America.
University of California, San Diego · USThe University of Texas at Austin · USUniversity of Colorado Boulder · US

Funding

Rapid evolution of genes critical for genome integrityR01GM093086 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI SAWYER, SARA · 2010 to 2016
$1.9M
Antiviral host defense through selective translational inhibitionR01GM101982 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID, MICHAEL · 2012 to 2015
$1.2M
STING as an Evolutionary Barrier to Dengue Transmission Between PrimatesF30AI112277 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI STABELL, ALEXANDER CHRISTIAN · 2014 to 2018
$173k
NIAID NIH HHS F30 AI112277NIGMS NIH HHS R01 GM093086NIGMS NIH HHS R01 GM101982
6 · The paper itself

Abstract

Schlafen11 (encoded by the SLFN11 gene) has been shown to inhibit the accumulation of HIV-1 proteins. We show that the SLFN11 gene is under positive selection in simian primates and is species-specific in its activity against HIV-1. The activity of human Schlafen11 is relatively weak compared to that of some other primate versions of this protein, with the versions encoded by chimpanzee, orangutan, gibbon, and marmoset being particularly potent inhibitors of HIV-1 protein production. Interestingly, we find that Schlafen11 is functional in the absence of infection and reduces protein production from certain non-viral (GFP) and even host (Vinculin and GAPDH) transcripts. This suggests that Schlafen11 may just generally block protein production from non-codon optimized transcripts. Because Schlafen11 is an interferon-stimulated gene with a broad ability to inhibit protein production from many host and viral transcripts, its role may be to create a general antiviral state in the cell. Interestingly, the strong inhibitors such as marmoset Schlafen11 consistently block protein production better than weak primate Schlafen11 proteins, regardless of the virus or host target being analyzed. Further, we show that the residues to which species-specific differences in Schlafen11 potency map are distinct from residues that have been targeted by positive selection. We speculate that the positive selection of SLFN11 could have been driven by a number of different factors, including interaction with one or more viral antagonists that have yet to be identified.

Indexed as

Evolution, MolecularAnimalsCallithrixFlow CytometryHIV-1HumansHylobatesImmunoblottingMutagenesis, Site-DirectedNuclear ProteinsPan troglodytesPolymerase Chain ReactionPongoPrimatesSelection, GeneticSpecies SpecificityNuclear ProteinsViral Proteins

Identifiers

PMID28027315
PMCPMC5189954
OpenAlexW2565214472

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.