Evidence map›Paper›PMID 28025315›Full record

ArticleJournal of experimental botany2017

α2-COP is involved in early secretory traffic in Arabidopsis and is required for plant growth.

Fátima Gimeno-Ferrer, Noelia Pastor-Cantizano, César Bernat-Silvestre, Pilar Selvi-Martínez, Francisco Vera-Sirera, Caiji Gao, Miguel Angel Perez-Amador, Liwen Jiang, Fernando Aniento, María Jesús Marcote

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. An Overview of Protein Secretion in Plant Cells.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
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  14. Loss ofFrontiers in plant science · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Fátima Gimeno-FerrerDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
Noelia Pastor-CantizanoDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
César Bernat-SilvestreDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
Pilar Selvi-MartínezDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
Francisco Vera-SireraInstituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain.
Caiji GaoSchool of Life Sciences, Centre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Miguel Angel Perez-AmadorInstituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain.
Liwen JiangSchool of Life Sciences, Centre for Cell and Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Fernando AnientoDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
María Jesús MarcoteDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universitat de València, Burjassot, Spain.
Universitat de València · ESChinese University of Hong Kong · CNUniversitat Politècnica de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COP (coat protein) I-coated vesicles mediate intra-Golgi transport and retrograde transport from the Golgi to the endoplasmic reticulum. These vesicles form through the action of the small GTPase ADP-ribosylation factor 1 (ARF1) and the COPI heptameric protein complex (coatomer), which consists of seven subunits (α-, β-, β'-, γ-, δ-, ε- and ζ-COP). In contrast to mammals and yeast, several isoforms for coatomer subunits, with the exception of γ and δ, have been identified in Arabidopsis. To understand the role of COPI proteins in plant biology, we have identified and characterized a loss-of-function mutant of α2-COP, an Arabidopsis α-COP isoform. The α2-cop mutant displayed defects in plant growth, including small rosettes, stems and roots and mislocalization of p24δ5, a protein of the p24 family containing a C-terminal dilysine motif involved in COPI binding. The α2-cop mutant also exhibited abnormal morphology of the Golgi apparatus. Global expression analysis of the α2-cop mutant revealed altered expression of plant cell wall-associated genes. In addition, a strong upregulation of SEC31A, which encodes a subunit of the COPII coat, was observed in the α2-cop mutant; this also occurs in a mutant of a gene upstream of COPI assembly, GNL1, which encodes an ARF-guanine nucleotide exchange factor (GEF). These findings suggest that loss of α2-COP affects the expression of secretory pathway genes.

Indexed as

ArabidopsisArabidopsis ProteinsBiological TransportCoatomer ProteinEndoplasmic ReticulumUbiquitin-Protein LigasesArabidopsis ProteinsAT2G32950 protein, ArabidopsisCoatomer ProteinUbiquitin-Protein LigasesArabidopsiscoat proteinCOPICOPIIGolgi apparatusp24 family proteinSEC31α1-COPα2-COP

Identifiers

PMID28025315
PMCPMC5441910
OpenAlexW2566106588

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.