Evidence map›Paper›PMID 28025172›Full record

ArticleJournal of neuroscience methods2017

CRISPR/Cas9 system-mediated impairment of synaptobrevin/VAMP function in postmitotic hippocampal neurons.

Patricia M Horvath, Ege T Kavalali, Lisa M Monteggia

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. GEARBOCS: An Adeno Associated Virus Tool forbioRxiv : the preprint server for biology · 2024
    Article
  2. Article
  3. Podoplanin Gene Disruption in Mice PromotesFrontiers in cellular neuroscience · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Patricia M HorvathDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Ege T KavalaliDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA; Department of Physiology, UT Southwestern Medical Center, Dallas, TX 75390, USA.
Lisa M MonteggiaDepartment of Neuroscience, UT Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: lisa.monteggia@utsouthwestern.edu.

Funding

ANTIDEPRESSANTS & INTRACELLULAR SIGNALING LINKED TO BDNFR01MH070727 · NIMH · VANDERBILT UNIVERSITY · PI LISA M MONTEGGIA · 2005 to 2026
$8.9M
Role of SNARE Interactions in Central Synapse FunctionR01MH066198 · NIMH · VANDERBILT UNIVERSITY · PI KAVALALI, EGE T · 2004 to 2023
$7.9M
DIVISION OF CELL &MOLECULAR BIOLOGY TRAINING PROGRAMT32GM008203 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI COBB, MELANIE H. · 1987 to 2018
$7.0M
MECP2 DEPENDENT TRANSCRIPTIONAL REPRESSION & NEUROTRANSMISSIONR01MH081060 · NIMH · VANDERBILT UNIVERSITY · PI MONTEGGIA, LISA M · 2008 to 2017
$3.7M
MeCP2 Dependent Transcriptional Repression & NeurotransmissionR56MH081060 · NIMH · VANDERBILT UNIVERSITY · PI MONTEGGIA, LISA M · 2021 to 2021
$396k
NIGMS NIH HHS T32 GM008203NIMH NIH HHS R01 MH066198NIMH NIH HHS R01 MH070727NIMH NIH HHS R01 MH081060NIMH NIH HHS R56 MH081060
6 · The paper itself

Abstract

backgroundThe use of the CRISPR/Cas9 system is becoming widespread, however current studies have predominantly focused on dividing cells. It is currently unknown if CRISPR/Cas9 can be used in a postmitotic setting to examine non-cell autonomous/presynaptic phenotypes in the resulting genetically heterogeneous cell population. NEW

methodA single CRISPR/Cas9 lentivirus was used to transfect a high percentage of primary cultured neurons and target synaptobrevin 2 (Syb2, also called VAMP2).

resultsPrimary hippocampal cultures infected with the Syb2 targeting virus displayed dramatic reductions in Syb2 protein and immunocytochemical staining. In many boutons Syb2 was completely undetected. These cultures recapitulated the known functional phenotypes of Syb2 knockout neurons, which are non-cell autonomous and presynaptic in origin, indicating that Syb2 was knocked out in a large fraction of neurons. COMPARISON WITH EXISTING METHOD(S): Previous methods used multiple viruses or sparse transfection methods and only examined cell autonomous or postsynaptic phenotypes. The current method demonstrates that the CRISPR/Cas9 system can be used to alter network dynamics by removing or lowering the target gene from a majority of cells in the culture.

conclusionsA combination of CRISPR/Cas9 system and single high efficiency lentivirus infection can be used to examine non-cell autonomous and presynaptic phenotypes in postmitotic neurons.

Indexed as

CRISPR-Cas SystemsAnimalsBlotting, WesternCells, CulturedExcitatory Postsynaptic PotentialsGene EditingGene Knockout TechniquesGenetic VectorsHEK293 CellsHippocampusHumansImmunohistochemistryLentivirusMiceMice, Inbred C57BLMiniature Postsynaptic PotentialsVesicle-Associated Membrane Protein 2Gene knockoutNeuronsSynaptic transmissionSynaptobrevin

Identifiers

PMID28025172
PMCPMC5505177

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.