Evidence map›Paper›PMID 28017370›Full record

ArticleAmerican journal of human genetics2017

De Novo Mutations in EBF3 Cause a Neurodevelopmental Syndrome.

Hannah Sleven, Seth J Welsh, Jing Yu, Mair E A Churchill, Caroline F Wright, Alex Henderson, Rita Horvath, Julia Rankin, Julie Vogt, Alex Magee and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 75 citations in OpenAlex.

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  10. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
    Review
  11. Article
  12. Molecular and Cellular Mechanisms of Motor Circuit Development.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Detailed Analysis of ITPR1 Missense Variants Guides Diagnostics and Therapeutic Design.Movement disorders : official journal of the Movement Disorder Society · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 14 institutions in 4 countries.

Hannah SlevenNuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX3 9DU, UK.
Seth J WelshProgram in Molecular Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA.
Jing YuNuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX3 9DU, UK.
Mair E A ChurchillProgram in Molecular Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA; Department of Pharmacology, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA.
Caroline F WrightWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
Alex HendersonNorthern Genetics Service, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne NE1 3BZ, UK.
Rita HorvathJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Central Parkway, Newcastle upon Tyne NE1 3BZ, UK.
Julia RankinPeninsula Clinical Genetics Service, Exeter EX1 2ED, UK.
Julie VogtWest Midlands Regional Genetics Service, Birmingham Women's NHS Foundation Trust, Birmingham Women's Hospital, Birmingham B15 2TG, UK.
Alex MageeDepartment of Genetic Medicine, Belfast City Hospital, Belfast BT9 7AB, UK.
Vivienne McConnellDepartment of Genetic Medicine, Belfast City Hospital, Belfast BT9 7AB, UK.
Andrew GreenDepartment of Clinical Genetics, Our Lady's Hospital, Crumlin, Dublin D12 N512, Ireland; Health Science Centre, School of Medicine & Medical Science, University College Dublin, Belfield, Dublin 4, Ireland.
Mary D KingDepartment of Paediatric Neurology and Clinical Neurophysiology, Temple Street Children's University Hospital, Dublin 1, Ireland; Academic Centre on Rare Diseases, School of Medicine and Medical Science, University College Dublin, Dublin 4, Ireland.
Helen CoxWest Midlands Regional Genetics Service, Birmingham Women's NHS Foundation Trust, Birmingham Women's Hospital, Birmingham B15 2TG, UK.
Linlea ArmstrongDepartment of Medical Genetics, Children's & Women's Health Centre of British Columbia, 4500 Oak Street, Vancouver, BC V6H 3N1, Canada.
Anna LehmanDepartment of Medical Genetics, Children's & Women's Health Centre of British Columbia, 4500 Oak Street, Vancouver, BC V6H 3N1, Canada.
Tanya N NelsonDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC V6T 2B5, Canada; Department of Pathology and Laboratory Medicine, BC Children's and BC Women's Hospitals, Vancouver, BC V6H 3N1, Canada.
Deciphering Developmental Disorders studyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
CAUSES studyDepartment of Medical Genetics, Children's & Women's Health Centre of British Columbia, 4500 Oak Street, Vancouver, BC V6H 3N1, Canada.
Jonathan WilliamsOxford Medical Genetics Laboratories, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford OX3 7LJ, UK.
Penny CloustonOxford Medical Genetics Laboratories, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford OX3 7LJ, UK.
James HagmanProgram in Molecular Biology, University of Colorado, Anschutz Medical Campus, Aurora, CO 80045, USA; Department of Biomedical Research, National Jewish Health, Denver, CO 80206, USA. Electronic address: hagmanj@njhealth.org.
Andrea H NémethNuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX3 9DU, UK; Oxford Centre for Genomic Medicine, Nuffield Orthopaedic Centre, Oxford University Hospitals NHS Foundation Trust, Windmill Road, Headington, Oxford OX3 7HE, UK. Electronic address: andrea.nemeth@ndcn.ox.ac.uk.
Birmingham Women's Hospital · GBChildren's & Women's Health Centre of British Columbia · CAChurchill Hospital · GBUniversity College Dublin · IEUniversity of Colorado Anschutz Medical Campus · USUniversity of Oxford · GBUniversity of Ulster · GBMuscular Dystrophy UK · GBNational Jewish Health · USNewcastle upon Tyne Hospitals NHS Foundation Trust · GBNuffield Orthopaedic Centre · GBPeninsula College of Medicine and Dentistry · GBUniversity of British Columbia · CAWellcome Sanger Institute · GB

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Regulation of B Cell Development and Function by Zfp521R01AI098417 · NIAID · NATIONAL JEWISH HEALTH · PI HAGMAN, JAMES R. · 2012 to 2016
$2.0M
Medical Research Council G1000848Medical Research Council MC_UP_1502/3Medical Research Council MR/N025431/1NCI NIH HHS P30 CA046934NIAID NIH HHS R01 AI098417Wellcome Trust
6 · The paper itself

Abstract

Early B cell factor 3 (EBF3) is an atypical transcription factor that is thought to influence the laminar formation of the cerebral cortex. Here, we report that de novo mutations in EBF3 cause a complex neurodevelopmental syndrome. The mutations were identified in two large-scale sequencing projects: the UK Deciphering Developmental Disorders (DDD) study and the Canadian Clinical Assessment of the Utility of Sequencing and Evaluation as a Service (CAUSES) study. The core phenotype includes moderate to severe intellectual disability, and many individuals exhibit cerebellar ataxia, subtle facial dysmorphism, strabismus, and vesicoureteric reflux, suggesting that EBF3 has a widespread developmental role. Pathogenic de novo variants identified in EBF3 include multiple loss-of-function and missense mutations. Structural modeling suggested that the missense mutations affect DNA binding. Functional analysis of mutant proteins with missense substitutions revealed reduced transcriptional activities and abilities to form heterodimers with wild-type EBF3. We conclude that EBF3, a transcription factor previously unknown to be associated with human disease, is important for brain and other organ development and warrants further investigation.

Indexed as

MutationAdolescentAge of OnsetAtaxiaCanadaChildDevelopmental DisabilitiesDNAFaceFemaleHumansInfantInfant, NewbornIntellectual DisabilityMaleMutation, MissenseDNAEBF3 protein, humanTranscription Factors

Identifiers

PMID28017370
PMCPMC5223060
OpenAlexW2566287338

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.