ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2017
Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
34 citing papers in PubMed, 52 citations in OpenAlex.
- Agro-Morphological and Cytogenetic Characterization ofPlants (Basel, Switzerland) · 2026Article
- Chromosome-level genome assembly of the ornamental plant Alcea rosea.Scientific data · 2025Article
- The genetic basis of replicated bullseye pattern reduction across the Hibiscus trionum complex.The New phytologist · 2025Article
- Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.Functional & integrative genomics · 2025Review
- Quality assessment of gene repertoire annotations with OMArk.Nature biotechnology · 2025Article
- Genome assembly of Hibiscus sabdariffa L. provides insights into metabolisms of medicinal natural products.G3 (Bethesda, Md.) · 2024Article
- High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development.Plant communications · 2024Article
- Genome-Wide Analysis of the MADS-Box Gene Family inInternational journal of molecular sciences · 2023Article
- Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms.Scientific data · 2023Article
- Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Article
- The genome of okra (Horticulture research · 2023Article
- From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.Scientific reports · 2023Article
- Review of recent advances in post-harvest techniques for tropical cut flowers and future prospects:Frontiers in plant science · 2023Review
- The complete chloroplast genome ofFrontiers in plant science · 2023Article
- A High-Quality, Chromosome-Level Genome Provides Insights Into Determinate Flowering Time and Color of Cotton Rose (Frontiers in plant science · 2022Article
- The genome ofHorticulture research · 2022Article
- An integrated metabolome and transcriptome analysis of theFrontiers in genetics · 2022Article
- The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa.Scientific reports · 2021Article
- Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae).BMC ecology and evolution · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
27 authors at 8 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hibiscus syriacus (L.) (rose of Sharon) is one of the most widespread garden shrubs in the world. We report a draft of the H. syriacus genome comprised of a 1.75 Gb assembly that covers 92% of the genome with only 1.7% (33 Mb) gap sequences. Predicted gene modeling detected 87,603 genes, mostly supported by deep RNA sequencing data. To define gene family distribution among relatives of H. syriacus, orthologous gene sets containing 164,660 genes in 21,472 clusters were identified by OrthoMCL analysis of five plant species, including H. syriacus, Arabidopsis thaliana, Gossypium raimondii, Theobroma cacao and Amborella trichopoda. We inferred their evolutionary relationships based on divergence times among Malvaceae plant genes and found that gene families involved in flowering regulation and disease resistance were more highly divergent and expanded in H. syriacus than in its close relatives, G. raimondii (DD) and T. cacao. Clustered gene families and gene collinearity analysis revealed that two recent rounds of whole-genome duplication were followed by diploidization of the H. syriacus genome after speciation. Copy number variation and phylogenetic divergence indicates that WGDs and subsequent diploidization led to unequal duplication and deletion of flowering-related genes in H. syriacus and may affect its unique floral morphology.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.